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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC3BG070090.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 197aa MW: 21876 Da PI: 12.3514 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 64.5 | 2.3e-20 | 24 | 93 | 1 | 72 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
rWt++e+l+Li+a+r +e+r + +W+ vs+++r++g+er+p qC+++w nl+++ kki ++ekk +
TRIDC3BG070090.2 24 RWTRHETLVLIQAKRVTEQRAAQ--PVRLKWAVVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKKAR 93
8****************998655..5899****************************************973 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 197 aa Download sequence |
EMMSANGDSP AGAAVTTPRS RLPRWTRHET LVLIQAKRVT EQRAAQPVRL KWAVVSAYCR 60 RHGVERGPMQ CRKRWGNLSW DLKKIVAWEK KARHCRRRRH GRRGLGGAGA RVVLGHARGG 120 AARQAAAVVV RPGGLRCHRR RRRRRQPAEA GLCRGDGARR RRGRTPAVAD DGHAHPSDGE 180 RQEAGVGQEL DVAAGQR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 136 | 145 | RCHRRRRRRR |
| 2 | 139 | 144 | RRRRRR |
| 3 | 139 | 145 | RRRRRRR |
| 4 | 139 | 162 | RRRRRRRQPAEAGLCRGDGARRRR |
| 5 | 140 | 145 | RRRRRR |
| 6 | 140 | 163 | RRRRRRRQPAEAGLCRGDGARRRR |
| 7 | 141 | 164 | RRRRRRRQPAEAGLCRGDGARRRR |
| 8 | 142 | 165 | RRRRRRRQPAEAGLCRGDGARRRR |
| 9 | 143 | 166 | RRRRRRRQPAEAGLCRGDGARRRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G33550.1 | 8e-25 | Trihelix family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC3BG070090.2 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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