PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4AG003830.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28883.8 Da    PI: 8.314
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4AG003830.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-271059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+iifs  g+l+e+ss
  TRIDC4AG003830.1 10 RIENKTTRQVTFTKRRNGLLKKAYELSLLCDAEVALIIFSGGGRLFEFSS 59
                      8***********************************************96 PP
2K-box92.19.8e-31841711299
             K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       a++e  +qe+ kLk ++e Lq++qR++lGedL++L+++eL+q+e+q++ slk+iR++Kn++ll+++ +l+ ke+el ++nk+Lrkkl 
  TRIDC4AG003830.1  84 AENEINYQEYLKLKTRLEYLQSSQRNILGEDLGPLTMRELEQIENQIDISLKHIRTRKNKVLLDELYDLKSKEQELLDQNKDLRKKLH 171
                       5667789******************************************************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRGKVEIRR IENKTTRQVT FTKRRNGLLK KAYELSLLCD AEVALIIFSG GGRLFEFSSS  60
SCMYKILERY RTCNYNSPEA TPPAENEINY QEYLKLKTRL EYLQSSQRNI LGEDLGPLTM  120
RELEQIENQI DISLKHIRTR KNKVLLDELY DLKSKEQELL DQNKDLRKKL HDISCAENAL  180
HMSWQDGGHG SSSGHAIKTT YPGLLQRPEH DSSMQIGYIF LHGHRYHQLN NEDMAPQRLD  240
GHLGSFAGWI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.14e-73MIKC_MADS family protein