PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG005810.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 524aa MW: 55260.7 Da PI: 9.1882

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG005810.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H TRIDC4AG005810.5 55 FVCEICNKGFQRDQNLQLHRRGH 77 89*******************88 PP
2	zf-C2H2	13.4	0.00023	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ TRIDC4AG005810.5 131 WKCDKCSKKYAVQSDWKAHAKTC 153 58******************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MEVDTSSATA KSGGAPPPPP PGPPAKKKRA LPGMPDPDAE VIALSPKTLM ATNRFVCEIC 60 NKGFQRDQNL QLHRRGHNLP WKLRQRSGKE VRKRVYVCPE PSCVHHDASR ALGDLTGIKK 120 HFCRKHGEKK WKCDKCSKKY AVQSDWKAHA KTCGSREYRC DCGTLFSRRD SFITHRAFCD 180 ALAEESAKAR APPAEDGSSG AAAPPALPPP PAAPVPLQQL PPAPAPQQHE EPVELQKREI 240 GAAAPEPVVQ YTPPAPLMPS PPSVNGANVS ASTSSVAATS QSLLGSMFAP SSVAQAPQYP 300 ERALAAKPPS LCLATDAASA QFSAPAADRQ QQQLPPPSPS PSAHMSATAL LQKAAQMGAT 360 SSSSSFLRGL GLDISSSSPA STSSGQHHHH HHHHHHQEAM QMQFPEGSLQ QWPPRLEPEP 420 APMMSAGLGL GLPYDSTGGP MGLPELMMGQ SSLFSAKPAT LDFLGLGMSP TGATTSRGLP 480 VFMQPMGGAV GMARSGTGPP DTFGAGRGAQ GKPWERNPSS SPIL

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MEVDTSSATA KSGGAPPPPP PGPPAKKKRA LPGMPDPDAE VIALSPKTLM ATNRFVCEIC  60
NKGFQRDQNL QLHRRGHNLP WKLRQRSGKE VRKRVYVCPE PSCVHHDASR ALGDLTGIKK  120
HFCRKHGEKK WKCDKCSKKY AVQSDWKAHA KTCGSREYRC DCGTLFSRRD SFITHRAFCD  180
ALAEESAKAR APPAEDGSSG AAAPPALPPP PAAPVPLQQL PPAPAPQQHE EPVELQKREI  240
GAAAPEPVVQ YTPPAPLMPS PPSVNGANVS ASTSSVAATS QSLLGSMFAP SSVAQAPQYP  300
ERALAAKPPS LCLATDAASA QFSAPAADRQ QQQLPPPSPS PSAHMSATAL LQKAAQMGAT  360
SSSSSFLRGL GLDISSSSPA STSSGQHHHH HHHHHHQEAM QMQFPEGSLQ QWPPRLEPEP  420
APMMSAGLGL GLPYDSTGGP MGLPELMMGQ SSLFSAKPAT LDFLGLGMSP TGATTSRGLP  480
VFMQPMGGAV GMARSGTGPP DTFGAGRGAQ GKPWERNPSS SPIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	2e-96	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG005810.5