PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4AG006600.10
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 141aa    MW: 16106.6 Da    PI: 4.6825
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4AG006600.10genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.22.5e-093421150
                       HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        tf  R  g+   A+EL vLC+aev +++f s g+  +y+
  TRIDC4AG006600.10  3 ATFGERNGGLVREAQELVVLCEAEVDILVFDSAGRQLDYC 42
                       69******************************99988887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
RWATFGERNG GLVREAQELV VLCEAEVDIL VFDSAGRQLD YCSPHTSYME LDTAKRISVE  60
GLERFREVKY YLILIIVDTS GRHNQKAALF EEMRQVAEAR SLALLLLSSF IEIFADLMVF  120
PQKRDLMIFV MDGSIVHAAF D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-11MIKC_MADS family protein