PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4AG008140.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27206.7 Da    PI: 7.9657
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4AG008140.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.7e-281059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+iifs +g+l+e+ss
  TRIDC4AG008140.1 10 RIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSS 59
                      8***********************************************96 PP
2K-box99.93.7e-33851711399
             K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       ++e  +qe+ kLk ++e Lq++qR++lGedL++Ls+keL q+e+q++ slk+iRskKn++ll+q+ el+ ke+elq+enk+Lrkkl+
  TRIDC4AG008140.1  85 ENEINYQEYLKLKTRVEFLQSSQRNILGEDLGPLSMKELDQIENQIDASLKHIRSKKNQVLLDQLFELKSKEQELQDENKDLRKKLQ 171
                       567789*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MGRGKVEMRR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS  60
SCMYKTLERY RTCNSNSQEA APPLENEINY QEYLKLKTRV EFLQSSQRNI LGEDLGPLSM  120
KELDQIENQI DASLKHIRSK KNQVLLDQLF ELKSKEQELQ DENKDLRKKL QDTTSSCGEN  180
AVHMSWQDGG QSSSRVLQHP EHDTSMQIGY PQAYMDQLNS RDHVASERPG GGSSAGWI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.14e-75MIKC_MADS family protein