PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG009980.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 415aa MW: 44082.1 Da PI: 9.8306

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG009980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.3	6.9e-07	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H TRIDC4AG009980.1 77 YVCEICGQGFQREQNLQMHRRRH 99 9*********************9 PP
2	zf-C2H2	10.8	0.0015	173	195	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ TRIDC4AG009980.1 173 WVCARCAKGYAVQSDYKAHLKTC 195 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MALVKSHHQM LASSSTSSSS PSSQQQPPPP PPPLAPPPPA TDQPSPAKRK RRPPGTPDPD 60 AEVVALTPRT LLESDRYVCE ICGQGFQREQ NLQMHRRRHK VPWRLVKRAP APSAGEDGGA 120 GTAGGAGATT VPRKRVFVCP EPSCLHHDPA HALGDLVGIK KHFRRKHGGR RQWVCARCAK 180 GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CNSGRMRGEA GDVPSALPVL 240 RPVVIRHPAP GVPSTPPPEL QLLPVATKAP VNATPAVFSA SHEPHATTKL ELSIGPVASS 300 DGVSGADDGR EEMMRAMQEK AAADAERARA REEAAAAERA LEEARRARQR ARGELEKACA 360 LRDHAARLLA HVTCHACRQR SFGMVPMGVA AGGDGGHGGS AVACEALRRG AGLGL

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MALVKSHHQM LASSSTSSSS PSSQQQPPPP PPPLAPPPPA TDQPSPAKRK RRPPGTPDPD  60
AEVVALTPRT LLESDRYVCE ICGQGFQREQ NLQMHRRRHK VPWRLVKRAP APSAGEDGGA  120
GTAGGAGATT VPRKRVFVCP EPSCLHHDPA HALGDLVGIK KHFRRKHGGR RQWVCARCAK  180
GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CNSGRMRGEA GDVPSALPVL  240
RPVVIRHPAP GVPSTPPPEL QLLPVATKAP VNATPAVFSA SHEPHATTKL ELSIGPVASS  300
DGVSGADDGR EEMMRAMQEK AAADAERARA REEAAAAERA LEEARRARQR ARGELEKACA  360
LRDHAARLLA HVTCHACRQR SFGMVPMGVA AGGDGGHGGS AVACEALRRG AGLGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	53	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	2e-87	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG009980.1