PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4AG011120.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 241aa    MW: 25554.7 Da    PI: 5.5381
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4AG011120.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.73.5e-53431481101
             NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                       ql++fw++q     + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd+
  TRIDC4AG011120.1  43 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDV 135
                       89*****997665555689************************************************************************** PP

             NF-YC  89 fdflvdivprdel 101
                       fdflvdivpr+e 
  TRIDC4AG011120.1 136 FDFLVDIVPREEA 148
                       **********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MENHQLPYTT QPPATGASGA PLPGVPGPPP VPHHHLLQQQ QAQLQAFWAY QRQEAERASA  60
SDFKNHQLPL ARIKKIMKAD EDVRMISAEA PVLFAKACEL FILELTIRSW LHAEENKRRT  120
LQRNDVAAAI ARTDVFDFLV DIVPREEAKE EPGSAALGFA AGGVGAAGGG PAAGLPYYYP  180
PMGQPAAPMM PAWHVPAWEP AWQQGGAGVD QGAGSFGEEG QGFTGGHGGS AGFPPGPPSS  240
E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124RRTLQRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.26e-63NF-YC family protein