PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG023960.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 246aa MW: 27082.3 Da PI: 5.2298

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG023960.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	54.1	3.4e-17	3	77	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+s+a elf+ +l s+ + ++ +tl+ ++++v+r fdfl++iv + TRIDC4AG023960.5 3 ARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDHSYKITLQSGAKTLNSFHLKQCVKRYSSFDFLTEIVNK 77 7**********************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
CPARIKKIMQ ADEDVGKIAL AVPVLVSRAL ELFLQDLIDH SYKITLQSGA KTLNSFHLKQ 60 CVKRYSSFDF LTEIVNKVPD LGGGESCGDE RGLPRRRKFS NGSDPENEEP RSSKMPIRSL 120 NTSPRGRGRG RGRGRGRPPT KRKEIGYVQF EDESSMFAEQ SEPLPGDEIV PETNRGNESI 180 PQSSHPLVEA PSAMTPAVIS KVEEASTNHQ PDWPMPDAIV GIGVGPSSFG HLTVQVDEVE 240 DYDNED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	98	PRRRK
2	125	134	RGRGRGRGRG
3	125	135	RGRGRGRGRGR
4	127	136	RGRGRGRGRG
5	127	137	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-42	NF-YC family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG023960.5