PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG037060.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 216aa MW: 23844.1 Da PI: 8.714

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG037060.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.8	1.5e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll+++p +reda++sl+yeAear+rdPvyG+v+ i+ lq +++q+++e TRIDC4AG037060.1 7 PCAACKLLRRKCTQGCVFAPYFPPDQPAKFANVHKVFGASNVSKLLNEIPVAQREDAVNSLAYEAEARLRDPVYGCVAYISVLQLKIKQVREE 99 7****************************************************************************************** PP DUF260 94 lallkee 100 +a +++e TRIDC4AG037060.1 100 IANARKE 106 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MSSSNSPCAA CKLLRRKCTQ GCVFAPYFPP DQPAKFANVH KVFGASNVSK LLNEIPVAQR 60 EDAVNSLAYE AEARLRDPVY GCVAYISVLQ LKIKQVREEI ANARKELAGY IGQAAYAPVV 120 PVQHPHAQYA AAGMGLVQPH PHPHQQMAMQ QQQHPYHQQQ IAEAQHLAAV VEVARAGQQQ 180 QQQQQHHHQH QQHEMMMMRQ TYANVHGGAA AGPTVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-61	LBD family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG037060.1