PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG047340.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 578aa MW: 62019.2 Da PI: 4.9456

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG047340.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	64	85	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ L+rH r+H TRIDC4AG047340.3 64 KCAKCPREFCSSVALRRHTRVH 85 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MAASGSGSGS GQIQPLKIPD AVVALAQAAA KANNSSNSAA AADATDKYLP GWPLFSPPKM 60 QLTKCAKCPR EFCSSVALRR HTRVHRRALK IDKDFPKNRD HLAAFWDKLT VDQAQAILSL 120 EGVAIEETSA LFILTSLSSW MCKPGYASLP LPYARAGNEL LDLIQTAASR LPISSNELFI 180 MLDEASENTF LCTNAADAAF VQKFLFDGEV EKVATELKNV VACTSYILEQ KLVEAWSADK 240 AAEALRCQKL LVEEEDAAQK RQAEIMERKR MKKLRQKEQR LKDLKDEGTM VQLPEVVDGA 300 TSSPGIQSLE AVSGPGLHEQ EDPQHLQLSA PVPSDDNGCN GEDANCGSGQ EIDTAAVFRE 360 QAMATSNLDR AENLPPNSSV SGSSATASKH PSSSSVRHSR HREPNVGAAT NKSKTWAWKV 420 RTGVEERCPK GEPDVDANQE TAPLNTDKNS QVLIGSISVA IEDGGGCSQD SKDNHPAPPE 480 SDSNTLNDPV AKVMQPTSHD ENGCEDANGG TITPAAEDHS PSSIMTDESG SVCGNVESAE 540 SVGLQRGTMM SSGQEAAAFL SQSKQLSYWL FRLQARAR

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MAASGSGSGS GQIQPLKIPD AVVALAQAAA KANNSSNSAA AADATDKYLP GWPLFSPPKM  60
QLTKCAKCPR EFCSSVALRR HTRVHRRALK IDKDFPKNRD HLAAFWDKLT VDQAQAILSL  120
EGVAIEETSA LFILTSLSSW MCKPGYASLP LPYARAGNEL LDLIQTAASR LPISSNELFI  180
MLDEASENTF LCTNAADAAF VQKFLFDGEV EKVATELKNV VACTSYILEQ KLVEAWSADK  240
AAEALRCQKL LVEEEDAAQK RQAEIMERKR MKKLRQKEQR LKDLKDEGTM VQLPEVVDGA  300
TSSPGIQSLE AVSGPGLHEQ EDPQHLQLSA PVPSDDNGCN GEDANCGSGQ EIDTAAVFRE  360
QAMATSNLDR AENLPPNSSV SGSSATASKH PSSSSVRHSR HREPNVGAAT NKSKTWAWKV  420
RTGVEERCPK GEPDVDANQE TAPLNTDKNS QVLIGSISVA IEDGGGCSQD SKDNHPAPPE  480
SDSNTLNDPV AKVMQPTSHD ENGCEDANGG TITPAAEDHS PSSIMTDESG SVCGNVESAE  540
SVGLQRGTMM SSGQEAAAFL SQSKQLSYWL FRLQARAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	274	ERKRMKKL
2	272	282	KKLRQKEQRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	3e-78	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG047340.3