PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4AG049360.6
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 247aa    MW: 26315.1 Da    PI: 10.8781
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4AG049360.6genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC25.92.1e-081542322098
             NF-YC  20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                       ++P+ar++ +++  +   +   e+  l+ ka elf+  ++  +  +a + +++++   ++++av + + ++fl d vp 
  TRIDC4AG049360.6 154 SFPMARVRLLMRDKDATIRSNNETVFLVNKASELFLEVFAKDAHQNALKERKKSITYENLSTAVCNEKRYKFLSDFVPL 232
                       79******99997776667778899999*******98888899999999***************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
GKPKPKPTPK KAKQQASDGA AKETPSKRKR DDAGEPQPQK SAKSAKKVDE ATPTKKKQAS  60
SGGAEKATTP SKTPQKKEAK SAKKSPGKAE KATPTKKQQA SGGPEKATPS KRKHGDLESP  120
KAAKSGQNGS SPAKKQKGKA AGAAPVAAEP GTCSFPMARV RLLMRDKDAT IRSNNETVFL  180
VNKASELFLE VFAKDAHQNA LKERKKSITY ENLSTAVCNE KRYKFLSDFV PLRVTAGDAL  240
KAVVKEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1714PTPKKAKQ
22757KRKRDDAGEPQPQKSAKSAKKVDEATPTKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-22NF-YC family protein