PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG055050.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1173aa MW: 129560 Da PI: 5.065

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG055050.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	1063	1088	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4AG055050.3 1063 FQCEidFCDMTFESRAELRAHERNiC 1088 89********************9877 PP
2	zf-C2H2	10.9	0.0015	1116	1140	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4AG055050.3 1116 FKCPwdGCGMTFKWLWAQTEHIRVH 1140 89*********************99 PP
3	zf-C2H2	14.1	0.00014	1146	1172	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ dCg++F+ s++ rH r+ H TRIDC4AG055050.3 1146 YECSvpDCGQTFRYVSDYSRHRRKfnH 1172 89999******************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1173 aa Download sequence
YSVETEDLHL CILIVLCSSS KWSDQYITGF NCGEAANFAT PQWLKFAKEA AVRRAVMNYL 60 PMLSHQQLLY LLAVSFISRT PRELLYGIRT SRLRDRRKEE RELLVKREFL QDMISENELL 120 CAFLKKKLIE NAVLWEPDLL PSSTALHSCS SGPKAPLKVD DVHSIESVPK ENSSSDDIAS 180 RAGIQPKCMS MDSKSSDAMS AAEAQKLDTD TDDDGDLPFD LSIDSGSLTC VACGILGFPF 240 MAILQPSKKA LEDMSLVDIE RFKLNCEKEN HSNAIPCSPD DSISGHPVIA KRPSSPVAQS 300 NFSHQNAESD KDGVGLDGPL LPHNNSAHSC NSENTLNPGI NTETTETKIP SARFGIEFSK 360 QTGRGDIDAQ ATESCGNTVD WNITSAFVRP RIFCLQHALE IEELLEGKGG AHALIICHAD 420 YTKLKALAIS IAEEIEFQFD CKDVPLANAS KSDLHLINIS IDDEGYKEDE RDWTTQMGLN 480 MKYFAKLRKE TPGCQEQPPL SFWKRLDISD KPSPISVVPN LKWLCRRART PYRVVGYAAS 540 RNATVGPDVV SPAVTKAEMG TSGNAYENAK EQRTGEQDAP LEPSRLQEAD DVADMHTCSE 600 DIDQDMHCLI GSKRQRTAEQ NAPLQPSRLQ EADDVVDMHM CSVDNDQDMH RLIGIPVAAA 660 EYPMTHQVCE GTVSVSTCEL DDLVSASTSD DPICSAHSQD SPGVSDDFTT EQQCVQSDEL 720 TSSVAMSAQQ FLVDGSMTAE DSSNHENLGS YNVTSECKDK QLQVQQEQEN IELCNNAGRN 780 LAAAVQVNSG HFGDKAVNLK SAIPTESQHE YPKRDAIVLE GMQAALTTVV SGENRNSVNT 840 ELDSLGILLG ALAEESILAD VPGKDEVDDA SLTLMTLASI DQSAGDVAHN EVIETSSSSV 900 GASISCKGRT LSNLASDGSL RIQNAEIQNK QENAEEVGAW NCQGLKNSRG ILDSSANSLS 960 DTGKSSGTPK AYQPDILSRS IGSSKRRSII CYVRRKRKQK RKRESELSTS NSQSFGSFAR 1020 APCERLRPRR KPAVIEEPAE QIETAKPSAA ATKGKRSKVV ELFQCEIDFC DMTFESRAEL 1080 RAHERNICTD ESCGKRFQSH KYLKRHQCVH RDERPFKCPW DGCGMTFKWL WAQTEHIRVH 1140 TGERPYECSV PDCGQTFRYV SDYSRHRRKF NHY

Sequence ? help Back to Top

Protein Sequence Length: 1173 aa Download sequence

YSVETEDLHL CILIVLCSSS KWSDQYITGF NCGEAANFAT PQWLKFAKEA AVRRAVMNYL  60
PMLSHQQLLY LLAVSFISRT PRELLYGIRT SRLRDRRKEE RELLVKREFL QDMISENELL  120
CAFLKKKLIE NAVLWEPDLL PSSTALHSCS SGPKAPLKVD DVHSIESVPK ENSSSDDIAS  180
RAGIQPKCMS MDSKSSDAMS AAEAQKLDTD TDDDGDLPFD LSIDSGSLTC VACGILGFPF  240
MAILQPSKKA LEDMSLVDIE RFKLNCEKEN HSNAIPCSPD DSISGHPVIA KRPSSPVAQS  300
NFSHQNAESD KDGVGLDGPL LPHNNSAHSC NSENTLNPGI NTETTETKIP SARFGIEFSK  360
QTGRGDIDAQ ATESCGNTVD WNITSAFVRP RIFCLQHALE IEELLEGKGG AHALIICHAD  420
YTKLKALAIS IAEEIEFQFD CKDVPLANAS KSDLHLINIS IDDEGYKEDE RDWTTQMGLN  480
MKYFAKLRKE TPGCQEQPPL SFWKRLDISD KPSPISVVPN LKWLCRRART PYRVVGYAAS  540
RNATVGPDVV SPAVTKAEMG TSGNAYENAK EQRTGEQDAP LEPSRLQEAD DVADMHTCSE  600
DIDQDMHCLI GSKRQRTAEQ NAPLQPSRLQ EADDVVDMHM CSVDNDQDMH RLIGIPVAAA  660
EYPMTHQVCE GTVSVSTCEL DDLVSASTSD DPICSAHSQD SPGVSDDFTT EQQCVQSDEL  720
TSSVAMSAQQ FLVDGSMTAE DSSNHENLGS YNVTSECKDK QLQVQQEQEN IELCNNAGRN  780
LAAAVQVNSG HFGDKAVNLK SAIPTESQHE YPKRDAIVLE GMQAALTTVV SGENRNSVNT  840
ELDSLGILLG ALAEESILAD VPGKDEVDDA SLTLMTLASI DQSAGDVAHN EVIETSSSSV  900
GASISCKGRT LSNLASDGSL RIQNAEIQNK QENAEEVGAW NCQGLKNSRG ILDSSANSLS  960
DTGKSSGTPK AYQPDILSRS IGSSKRRSII CYVRRKRKQK RKRESELSTS NSQSFGSFAR  1020
APCERLRPRR KPAVIEEPAE QIETAKPSAA ATKGKRSKVV ELFQCEIDFC DMTFESRAEL  1080
RAHERNICTD ESCGKRFQSH KYLKRHQCVH RDERPFKCPW DGCGMTFKWL WAQTEHIRVH  1140
TGERPYECSV PDCGQTFRYV SDYSRHRRKF NHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	985	1001	KRRSIICYVRRKRKQKR
2	985	1003	KRRSIICYVRRKRKQKRKR
3	993	1000	VRRKRKQK
4	995	1004	RKRKQKRKRE
5	997	1006	RKRKQKRKRE
6	1027	1031	RPRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	2e-50	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG055050.3