PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG055050.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1098aa MW: 121141 Da PI: 4.9928

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG055050.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	988	1013	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4AG055050.4 988 FQCEidFCDMTFESRAELRAHERNiC 1013 89********************9877 PP
2	zf-C2H2	11	0.0014	1041	1065	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4AG055050.4 1041 FKCPwdGCGMTFKWLWAQTEHIRVH 1065 89*********************99 PP
3	zf-C2H2	14.2	0.00013	1071	1097	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ dCg++F+ s++ rH r+ H TRIDC4AG055050.4 1071 YECSvpDCGQTFRYVSDYSRHRRKfnH 1097 89999******************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1098 aa Download sequence
FDFRTPRELL YGIRTSRLRD RRKEERELLV KREFLQDMIS ENELLCAFLK KKLIENAVLW 60 EPDLLPSSTA LHSCSSGPKA PLKVDDVHSI ESVPKENSSS DDIASRAGIQ PKCMSMDSKS 120 SDAMSAAEAQ KLDTDTDDDG DLPFDLSIDS GSLTCVACGI LGFPFMAILQ PSKKALEDMS 180 LVDIERFKLN CEKENHSNAI PCSPDDSISG HPVIAKRPSS PVAQSNFSHQ NAESDKDGVG 240 LDGPLLPHNN SAHSCNSENT LNPGINTETT ETKIPSARFG IEFSKQTGRG DIDAQATESC 300 GNTVDWNITS AFVRPRIFCL QHALEIEELL EGKGGAHALI ICHADYTKLK ALAISIAEEI 360 EFQFDCKDVP LANASKSDLH LINISIDDEG YKEDERDWTT QMGLNMKYFA KLRKETPGCQ 420 EQPPLSFWKR LDISDKPSPI SVVPNLKWLC RRARTPYRVV GYAASRNATV GPDVVSPAVT 480 KAEMGTSGNA YENAKEQRTG EQDAPLEPSR LQEADDVADM HTCSEDIDQD MHCLIGSKRQ 540 RTAEQNAPLQ PSRLQEADDV VDMHMCSVDN DQDMHRLIGI PVAAAEYPMT HQVCEGTVSV 600 STCELDDLVS ASTSDDPICS AHSQDSPGVS DDFTTEQQCV QSDELTSSVA MSAQQFLVDG 660 SMTAEDSSNH ENLGSYNVTS ECKDKQLQVQ QEQENIELCN NAGRNLAAAV QVNSGHFGDK 720 AVNLKSAIPT ESQHEYPKRD AIVLEGMQAA LTTVVSGENR NSVNTELDSL GILLGALAEE 780 SILADVPGKD EVDDASLTLM TLASIDQSAG DVAHNEVIET SSSSVGASIS CKGRTLSNLA 840 SDGSLRIQNA EIQNKQENAE EVGAWNCQGL KNSRGILDSS ANSLSDTGKS SGTPKAYQPD 900 ILSRSIGSSK RRSIICYVRR KRKQKRKRES ELSTSNSQSF GSFARAPCER LRPRRKPAVI 960 EEPAEQIETA KPSAAATKGK RSKVVELFQC EIDFCDMTFE SRAELRAHER NICTDESCGK 1020 RFQSHKYLKR HQCVHRDERP FKCPWDGCGM TFKWLWAQTE HIRVHTGERP YECSVPDCGQ 1080 TFRYVSDYSR HRRKFNHY

Sequence ? help Back to Top

Protein Sequence Length: 1098 aa Download sequence

FDFRTPRELL YGIRTSRLRD RRKEERELLV KREFLQDMIS ENELLCAFLK KKLIENAVLW  60
EPDLLPSSTA LHSCSSGPKA PLKVDDVHSI ESVPKENSSS DDIASRAGIQ PKCMSMDSKS  120
SDAMSAAEAQ KLDTDTDDDG DLPFDLSIDS GSLTCVACGI LGFPFMAILQ PSKKALEDMS  180
LVDIERFKLN CEKENHSNAI PCSPDDSISG HPVIAKRPSS PVAQSNFSHQ NAESDKDGVG  240
LDGPLLPHNN SAHSCNSENT LNPGINTETT ETKIPSARFG IEFSKQTGRG DIDAQATESC  300
GNTVDWNITS AFVRPRIFCL QHALEIEELL EGKGGAHALI ICHADYTKLK ALAISIAEEI  360
EFQFDCKDVP LANASKSDLH LINISIDDEG YKEDERDWTT QMGLNMKYFA KLRKETPGCQ  420
EQPPLSFWKR LDISDKPSPI SVVPNLKWLC RRARTPYRVV GYAASRNATV GPDVVSPAVT  480
KAEMGTSGNA YENAKEQRTG EQDAPLEPSR LQEADDVADM HTCSEDIDQD MHCLIGSKRQ  540
RTAEQNAPLQ PSRLQEADDV VDMHMCSVDN DQDMHRLIGI PVAAAEYPMT HQVCEGTVSV  600
STCELDDLVS ASTSDDPICS AHSQDSPGVS DDFTTEQQCV QSDELTSSVA MSAQQFLVDG  660
SMTAEDSSNH ENLGSYNVTS ECKDKQLQVQ QEQENIELCN NAGRNLAAAV QVNSGHFGDK  720
AVNLKSAIPT ESQHEYPKRD AIVLEGMQAA LTTVVSGENR NSVNTELDSL GILLGALAEE  780
SILADVPGKD EVDDASLTLM TLASIDQSAG DVAHNEVIET SSSSVGASIS CKGRTLSNLA  840
SDGSLRIQNA EIQNKQENAE EVGAWNCQGL KNSRGILDSS ANSLSDTGKS SGTPKAYQPD  900
ILSRSIGSSK RRSIICYVRR KRKQKRKRES ELSTSNSQSF GSFARAPCER LRPRRKPAVI  960
EEPAEQIETA KPSAAATKGK RSKVVELFQC EIDFCDMTFE SRAELRAHER NICTDESCGK  1020
RFQSHKYLKR HQCVHRDERP FKCPWDGCGM TFKWLWAQTE HIRVHTGERP YECSVPDCGQ  1080
TFRYVSDYSR HRRKFNHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	910	926	KRRSIICYVRRKRKQKR
2	910	928	KRRSIICYVRRKRKQKRKR
3	918	925	VRRKRKQK
4	920	929	RKRKQKRKRE
5	922	931	RKRKQKRKRE
6	952	956	RPRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	1e-50	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG055050.4