PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG055050.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1375aa MW: 151660 Da PI: 5.5656

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG055050.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	1265	1290	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4AG055050.6 1265 FQCEidFCDMTFESRAELRAHERNiC 1290 89********************9877 PP
2	zf-C2H2	10.6	0.0018	1318	1342	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4AG055050.6 1318 FKCPwdGCGMTFKWLWAQTEHIRVH 1342 89*********************99 PP
3	zf-C2H2	13.9	0.00016	1348	1374	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ dCg++F+ s++ rH r+ H TRIDC4AG055050.6 1348 YECSvpDCGQTFRYVSDYSRHRRKfnH 1374 89999******************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1375 aa Download sequence
GERYTLDQFE AKSRAFARAH LAGLRDPTPL AVESLFWKAS ADRPIYVEYA NDVPGSGFAA 60 SAQSHRRPHK KRRREGAPSS PDEGDKATGW KLSSSPWNLQ AIARAPGSLT RFMPDDVPGV 120 TSPMVYIGML FSWFAWHIED HELHSLNFLH TGAPKTWYAV PGDRAAELEE VIRVHGYGGN 180 PDRLASLAVL GEKTTLMSPE VIVAAGLPCC RLVQHPGEFV VTFPRAYHVG FSHGFNCGEA 240 ANFATPQWLK FAKEAAVRRA VMNYLPMLSH QQLLYLLAVS FISRELLYGI RTSRLRDRRK 300 EERELLVKRE FLQDMISENE LLCAFLKKKL IENAVLWEPD LLPSSTALHS CSSGPKAPLK 360 VDDVHSIESV PKENSSSDDI ASRAGIQPKC MSMDSKSSDA MSAAEAQKLD TDTDDDGDLP 420 FDLSIDSGSL TCVACGILGF PFMAILQPSK KALEDMSLVD IERFKLNCEK ENHSNAIPCS 480 PDDSISGHPV IAKRPSSPVA QSNFSHQNAE SDKDGVGLDG PLLPHNNSAH SCNSENTLNP 540 GINTETTETK IPSARFGIEF SKQTGRGDID AQATESCGNT VDWNITSAFV RPRIFCLQHA 600 LEIEELLEGK GGAHALIICH ADYTKLKALA ISIAEEIEFQ FDCKDVPLAN ASKSDLHLIN 660 ISIDDEGYKE DERDWTTQMG LNMKYFAKLR KETPGCQEQP PLSFWKRLDI SDKPSPISVV 720 PNLKWLCRRA RTPYRVVGYA ASRNATVGPD VVSPAVTKAE MGTSGNAYEN AKEQRTGEQD 780 APLEPSRLQE ADDVADMHTC SEDIDQDMHC LIGSKRQRTA EQNAPLQPSR LQEADDVVDM 840 HMCSVDNDQD MHRLIGIPVA AAEYPMTHQV CEGTVSVSTC ELDDLVSAST SDDPICSAHS 900 QDSPGVSDDF TTEQQCVQSD ELTSSVAMSA QQFLVDGSMT AEDSSNHENL GSYNVTSECK 960 DKQLQVQQEQ ENIELCNNAG RNLAAAVQVN SGHFGDKAVN LKSAIPTESQ HEYPKRDAIV 1020 LEGMQAALTT VVSGENRNSV NTELDSLGIL LGALAEESIL ADVPGKDEVD DASLTLMTLA 1080 SIDQSAGDVA HNEVIETSSS SVGASISCKG RTLSNLASDG SLRIQNAEIQ NKQENAEEVG 1140 AWNCQGLKNS RGILDSSANS LSDTGKSSGT PKAYQPDILS RSIGSSKRRS IICYVRRKRK 1200 QKRKRESELS TSNSQSFGSF ARAPCERLRP RRKPAVIEEP AEQIETAKPS AAATKGKRSK 1260 VVELFQCEID FCDMTFESRA ELRAHERNIC TDESCGKRFQ SHKYLKRHQC VHRDERPFKC 1320 PWDGCGMTFK WLWAQTEHIR VHTGERPYEC SVPDCGQTFR YVSDYSRHRR KFNHY

Sequence ? help Back to Top

Protein Sequence Length: 1375 aa Download sequence

GERYTLDQFE AKSRAFARAH LAGLRDPTPL AVESLFWKAS ADRPIYVEYA NDVPGSGFAA  60
SAQSHRRPHK KRRREGAPSS PDEGDKATGW KLSSSPWNLQ AIARAPGSLT RFMPDDVPGV  120
TSPMVYIGML FSWFAWHIED HELHSLNFLH TGAPKTWYAV PGDRAAELEE VIRVHGYGGN  180
PDRLASLAVL GEKTTLMSPE VIVAAGLPCC RLVQHPGEFV VTFPRAYHVG FSHGFNCGEA  240
ANFATPQWLK FAKEAAVRRA VMNYLPMLSH QQLLYLLAVS FISRELLYGI RTSRLRDRRK  300
EERELLVKRE FLQDMISENE LLCAFLKKKL IENAVLWEPD LLPSSTALHS CSSGPKAPLK  360
VDDVHSIESV PKENSSSDDI ASRAGIQPKC MSMDSKSSDA MSAAEAQKLD TDTDDDGDLP  420
FDLSIDSGSL TCVACGILGF PFMAILQPSK KALEDMSLVD IERFKLNCEK ENHSNAIPCS  480
PDDSISGHPV IAKRPSSPVA QSNFSHQNAE SDKDGVGLDG PLLPHNNSAH SCNSENTLNP  540
GINTETTETK IPSARFGIEF SKQTGRGDID AQATESCGNT VDWNITSAFV RPRIFCLQHA  600
LEIEELLEGK GGAHALIICH ADYTKLKALA ISIAEEIEFQ FDCKDVPLAN ASKSDLHLIN  660
ISIDDEGYKE DERDWTTQMG LNMKYFAKLR KETPGCQEQP PLSFWKRLDI SDKPSPISVV  720
PNLKWLCRRA RTPYRVVGYA ASRNATVGPD VVSPAVTKAE MGTSGNAYEN AKEQRTGEQD  780
APLEPSRLQE ADDVADMHTC SEDIDQDMHC LIGSKRQRTA EQNAPLQPSR LQEADDVVDM  840
HMCSVDNDQD MHRLIGIPVA AAEYPMTHQV CEGTVSVSTC ELDDLVSAST SDDPICSAHS  900
QDSPGVSDDF TTEQQCVQSD ELTSSVAMSA QQFLVDGSMT AEDSSNHENL GSYNVTSECK  960
DKQLQVQQEQ ENIELCNNAG RNLAAAVQVN SGHFGDKAVN LKSAIPTESQ HEYPKRDAIV  1020
LEGMQAALTT VVSGENRNSV NTELDSLGIL LGALAEESIL ADVPGKDEVD DASLTLMTLA  1080
SIDQSAGDVA HNEVIETSSS SVGASISCKG RTLSNLASDG SLRIQNAEIQ NKQENAEEVG  1140
AWNCQGLKNS RGILDSSANS LSDTGKSSGT PKAYQPDILS RSIGSSKRRS IICYVRRKRK  1200
QKRKRESELS TSNSQSFGSF ARAPCERLRP RRKPAVIEEP AEQIETAKPS AAATKGKRSK  1260
VVELFQCEID FCDMTFESRA ELRAHERNIC TDESCGKRFQ SHKYLKRHQC VHRDERPFKC  1320
PWDGCGMTFK WLWAQTEHIR VHTGERPYEC SVPDCGQTFR YVSDYSRHRR KFNHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1187	1203	KRRSIICYVRRKRKQKR
2	1187	1205	KRRSIICYVRRKRKQKRKR
3	1195	1202	VRRKRKQK
4	1197	1206	RKRKQKRKRE
5	1199	1208	RKRKQKRKRE
6	1229	1233	RPRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	1e-137	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG055050.6