PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG055050.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1378aa MW: 152014 Da PI: 5.6141

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG055050.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	1268	1293	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4AG055050.7 1268 FQCEidFCDMTFESRAELRAHERNiC 1293 89********************9877 PP
2	zf-C2H2	10.6	0.0018	1321	1345	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4AG055050.7 1321 FKCPwdGCGMTFKWLWAQTEHIRVH 1345 89*********************99 PP
3	zf-C2H2	13.9	0.00016	1351	1377	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ dCg++F+ s++ rH r+ H TRIDC4AG055050.7 1351 YECSvpDCGQTFRYVSDYSRHRRKfnH 1377 89999******************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1378 aa Download sequence
GERYTLDQFE AKSRAFARAH LAGLRDPTPL AVESLFWKAS ADRPIYVEYA NDVPGSGFAA 60 SAQSHRRPHK KRRREGAPSS PDEGDKATGW KLSSSPWNLQ AIARAPGSLT RFMPDDVPGV 120 TSPMVYIGML FSWFAWHIED HELHSLNFLH TGAPKTWYAV PGDRAAELEE VIRVHGYGGN 180 PDRLASLAVL GEKTTLMSPE VIVAAGLPCC RLVQHPGEFV VTFPRAYHVG FSHGFNCGEA 240 ANFATPQWLK FAKEAAVRRA VMNYLPMLSH QQLLYLLAVS FISRTPRELL YGIRTSRLRD 300 RRKEERELLV KREFLQDMIS ENELLCAFLK KKLIENAVLW EPDLLPSSTA LHSCSSGPKA 360 PLKVDDVHSI ESVPKENSSS DDIASRAGIQ PKCMSMDSKS SDAMSAAEAQ KLDTDTDDDG 420 DLPFDLSIDS GSLTCVACGI LGFPFMAILQ PSKKALEDMS LVDIERFKLN CEKENHSNAI 480 PCSPDDSISG HPVIAKRPSS PVAQSNFSHQ NAESDKDGVG LDGPLLPHNN SAHSCNSENT 540 LNPGINTETT ETKIPSARFG IEFSKQTGRG DIDAQATESC GNTVDWNITS AFVRPRIFCL 600 QHALEIEELL EGKGGAHALI ICHADYTKLK ALAISIAEEI EFQFDCKDVP LANASKSDLH 660 LINISIDDEG YKEDERDWTT QMGLNMKYFA KLRKETPGCQ EQPPLSFWKR LDISDKPSPI 720 SVVPNLKWLC RRARTPYRVV GYAASRNATV GPDVVSPAVT KAEMGTSGNA YENAKEQRTG 780 EQDAPLEPSR LQEADDVADM HTCSEDIDQD MHCLIGSKRQ RTAEQNAPLQ PSRLQEADDV 840 VDMHMCSVDN DQDMHRLIGI PVAAAEYPMT HQVCEGTVSV STCELDDLVS ASTSDDPICS 900 AHSQDSPGVS DDFTTEQQCV QSDELTSSVA MSAQQFLVDG SMTAEDSSNH ENLGSYNVTS 960 ECKDKQLQVQ QEQENIELCN NAGRNLAAAV QVNSGHFGDK AVNLKSAIPT ESQHEYPKRD 1020 AIVLEGMQAA LTTVVSGENR NSVNTELDSL GILLGALAEE SILADVPGKD EVDDASLTLM 1080 TLASIDQSAG DVAHNEVIET SSSSVGASIS CKGRTLSNLA SDGSLRIQNA EIQNKQENAE 1140 EVGAWNCQGL KNSRGILDSS ANSLSDTGKS SGTPKAYQPD ILSRSIGSSK RRSIICYVRR 1200 KRKQKRKRES ELSTSNSQSF GSFARAPCER LRPRRKPAVI EEPAEQIETA KPSAAATKGK 1260 RSKVVELFQC EIDFCDMTFE SRAELRAHER NICTDESCGK RFQSHKYLKR HQCVHRDERP 1320 FKCPWDGCGM TFKWLWAQTE HIRVHTGERP YECSVPDCGQ TFRYVSDYSR HRRKFNHY

Sequence ? help Back to Top

Protein Sequence Length: 1378 aa Download sequence

GERYTLDQFE AKSRAFARAH LAGLRDPTPL AVESLFWKAS ADRPIYVEYA NDVPGSGFAA  60
SAQSHRRPHK KRRREGAPSS PDEGDKATGW KLSSSPWNLQ AIARAPGSLT RFMPDDVPGV  120
TSPMVYIGML FSWFAWHIED HELHSLNFLH TGAPKTWYAV PGDRAAELEE VIRVHGYGGN  180
PDRLASLAVL GEKTTLMSPE VIVAAGLPCC RLVQHPGEFV VTFPRAYHVG FSHGFNCGEA  240
ANFATPQWLK FAKEAAVRRA VMNYLPMLSH QQLLYLLAVS FISRTPRELL YGIRTSRLRD  300
RRKEERELLV KREFLQDMIS ENELLCAFLK KKLIENAVLW EPDLLPSSTA LHSCSSGPKA  360
PLKVDDVHSI ESVPKENSSS DDIASRAGIQ PKCMSMDSKS SDAMSAAEAQ KLDTDTDDDG  420
DLPFDLSIDS GSLTCVACGI LGFPFMAILQ PSKKALEDMS LVDIERFKLN CEKENHSNAI  480
PCSPDDSISG HPVIAKRPSS PVAQSNFSHQ NAESDKDGVG LDGPLLPHNN SAHSCNSENT  540
LNPGINTETT ETKIPSARFG IEFSKQTGRG DIDAQATESC GNTVDWNITS AFVRPRIFCL  600
QHALEIEELL EGKGGAHALI ICHADYTKLK ALAISIAEEI EFQFDCKDVP LANASKSDLH  660
LINISIDDEG YKEDERDWTT QMGLNMKYFA KLRKETPGCQ EQPPLSFWKR LDISDKPSPI  720
SVVPNLKWLC RRARTPYRVV GYAASRNATV GPDVVSPAVT KAEMGTSGNA YENAKEQRTG  780
EQDAPLEPSR LQEADDVADM HTCSEDIDQD MHCLIGSKRQ RTAEQNAPLQ PSRLQEADDV  840
VDMHMCSVDN DQDMHRLIGI PVAAAEYPMT HQVCEGTVSV STCELDDLVS ASTSDDPICS  900
AHSQDSPGVS DDFTTEQQCV QSDELTSSVA MSAQQFLVDG SMTAEDSSNH ENLGSYNVTS  960
ECKDKQLQVQ QEQENIELCN NAGRNLAAAV QVNSGHFGDK AVNLKSAIPT ESQHEYPKRD  1020
AIVLEGMQAA LTTVVSGENR NSVNTELDSL GILLGALAEE SILADVPGKD EVDDASLTLM  1080
TLASIDQSAG DVAHNEVIET SSSSVGASIS CKGRTLSNLA SDGSLRIQNA EIQNKQENAE  1140
EVGAWNCQGL KNSRGILDSS ANSLSDTGKS SGTPKAYQPD ILSRSIGSSK RRSIICYVRR  1200
KRKQKRKRES ELSTSNSQSF GSFARAPCER LRPRRKPAVI EEPAEQIETA KPSAAATKGK  1260
RSKVVELFQC EIDFCDMTFE SRAELRAHER NICTDESCGK RFQSHKYLKR HQCVHRDERP  1320
FKCPWDGCGM TFKWLWAQTE HIRVHTGERP YECSVPDCGQ TFRYVSDYSR HRRKFNHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1190	1206	KRRSIICYVRRKRKQKR
2	1190	1208	KRRSIICYVRRKRKQKRKR
3	1198	1205	VRRKRKQK
4	1200	1209	RKRKQKRKRE
5	1202	1211	RKRKQKRKRE
6	1232	1236	RPRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	1e-141	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG055050.7