PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG055050.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1117aa MW: 123296 Da PI: 5.0496

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG055050.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	1007	1032	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4AG055050.8 1007 FQCEidFCDMTFESRAELRAHERNiC 1032 89********************9877 PP
2	zf-C2H2	10.9	0.0014	1060	1084	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4AG055050.8 1060 FKCPwdGCGMTFKWLWAQTEHIRVH 1084 89*********************99 PP
3	zf-C2H2	14.2	0.00013	1090	1116	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ dCg++F+ s++ rH r+ H TRIDC4AG055050.8 1090 YECSvpDCGQTFRYVSDYSRHRRKfnH 1116 89999******************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1117 aa Download sequence
MNYLPMLSHQ QLLYLLAVSF ISRTPRELLY GIRTSRLRDR RKEERELLVK REFLQDMISE 60 NELLCAFLKK KLIENAVLWE PDLLPSSTAL HSCSSGPKAP LKVDDVHSIE SVPKENSSSD 120 DIASRAGIQP KCMSMDSKSS DAMSAAEAQK LDTDTDDDGD LPFDLSIDSG SLTCVACGIL 180 GFPFMAILQP SKKALEDMSL VDIERFKLNC EKENHSNAIP CSPDDSISGH PVIAKRPSSP 240 VAQSNFSHQN AESDKDGVGL DGPLLPHNNS AHSCNSENTL NPGINTETTE TKIPSARFGI 300 EFSKQTGRGD IDAQATESCG NTVDWNITSA FVRPRIFCLQ HALEIEELLE GKGGAHALII 360 CHADYTKLKA LAISIAEEIE FQFDCKDVPL ANASKSDLHL INISIDDEGY KEDERDWTTQ 420 MGLNMKYFAK LRKETPGCQE QPPLSFWKRL DISDKPSPIS VVPNLKWLCR RARTPYRVVG 480 YAASRNATVG PDVVSPAVTK AEMGTSGNAY ENAKEQRTGE QDAPLEPSRL QEADDVADMH 540 TCSEDIDQDM HCLIGSKRQR TAEQNAPLQP SRLQEADDVV DMHMCSVDND QDMHRLIGIP 600 VAAAEYPMTH QVCEGTVSVS TCELDDLVSA STSDDPICSA HSQDSPGVSD DFTTEQQCVQ 660 SDELTSSVAM SAQQFLVDGS MTAEDSSNHE NLGSYNVTSE CKDKQLQVQQ EQENIELCNN 720 AGRNLAAAVQ VNSGHFGDKA VNLKSAIPTE SQHEYPKRDA IVLEGMQAAL TTVVSGENRN 780 SVNTELDSLG ILLGALAEES ILADVPGKDE VDDASLTLMT LASIDQSAGD VAHNEVIETS 840 SSSVGASISC KGRTLSNLAS DGSLRIQNAE IQNKQENAEE VGAWNCQGLK NSRGILDSSA 900 NSLSDTGKSS GTPKAYQPDI LSRSIGSSKR RSIICYVRRK RKQKRKRESE LSTSNSQSFG 960 SFARAPCERL RPRRKPAVIE EPAEQIETAK PSAAATKGKR SKVVELFQCE IDFCDMTFES 1020 RAELRAHERN ICTDESCGKR FQSHKYLKRH QCVHRDERPF KCPWDGCGMT FKWLWAQTEH 1080 IRVHTGERPY ECSVPDCGQT FRYVSDYSRH RRKFNHY

Sequence ? help Back to Top

Protein Sequence Length: 1117 aa Download sequence

MNYLPMLSHQ QLLYLLAVSF ISRTPRELLY GIRTSRLRDR RKEERELLVK REFLQDMISE  60
NELLCAFLKK KLIENAVLWE PDLLPSSTAL HSCSSGPKAP LKVDDVHSIE SVPKENSSSD  120
DIASRAGIQP KCMSMDSKSS DAMSAAEAQK LDTDTDDDGD LPFDLSIDSG SLTCVACGIL  180
GFPFMAILQP SKKALEDMSL VDIERFKLNC EKENHSNAIP CSPDDSISGH PVIAKRPSSP  240
VAQSNFSHQN AESDKDGVGL DGPLLPHNNS AHSCNSENTL NPGINTETTE TKIPSARFGI  300
EFSKQTGRGD IDAQATESCG NTVDWNITSA FVRPRIFCLQ HALEIEELLE GKGGAHALII  360
CHADYTKLKA LAISIAEEIE FQFDCKDVPL ANASKSDLHL INISIDDEGY KEDERDWTTQ  420
MGLNMKYFAK LRKETPGCQE QPPLSFWKRL DISDKPSPIS VVPNLKWLCR RARTPYRVVG  480
YAASRNATVG PDVVSPAVTK AEMGTSGNAY ENAKEQRTGE QDAPLEPSRL QEADDVADMH  540
TCSEDIDQDM HCLIGSKRQR TAEQNAPLQP SRLQEADDVV DMHMCSVDND QDMHRLIGIP  600
VAAAEYPMTH QVCEGTVSVS TCELDDLVSA STSDDPICSA HSQDSPGVSD DFTTEQQCVQ  660
SDELTSSVAM SAQQFLVDGS MTAEDSSNHE NLGSYNVTSE CKDKQLQVQQ EQENIELCNN  720
AGRNLAAAVQ VNSGHFGDKA VNLKSAIPTE SQHEYPKRDA IVLEGMQAAL TTVVSGENRN  780
SVNTELDSLG ILLGALAEES ILADVPGKDE VDDASLTLMT LASIDQSAGD VAHNEVIETS  840
SSSVGASISC KGRTLSNLAS DGSLRIQNAE IQNKQENAEE VGAWNCQGLK NSRGILDSSA  900
NSLSDTGKSS GTPKAYQPDI LSRSIGSSKR RSIICYVRRK RKQKRKRESE LSTSNSQSFG  960
SFARAPCERL RPRRKPAVIE EPAEQIETAK PSAAATKGKR SKVVELFQCE IDFCDMTFES  1020
RAELRAHERN ICTDESCGKR FQSHKYLKRH QCVHRDERPF KCPWDGCGMT FKWLWAQTEH  1080
IRVHTGERPY ECSVPDCGQT FRYVSDYSRH RRKFNHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	929	945	KRRSIICYVRRKRKQKR
2	929	947	KRRSIICYVRRKRKQKRKR
3	937	944	VRRKRKQK
4	939	948	RKRKQKRKRE
5	941	950	RKRKQKRKRE
6	971	975	RPRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	1e-50	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG055050.8