PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG001610.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 230aa MW: 25308.2 Da PI: 6.0164

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG001610.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.7	7.8e-38	20	120	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrr+C+++C++ap+f++eq +++fa++hk+FGasn +kll +lp ++r++a++++ yeA+ar++dPvyG+v++i++lqqq+ +l+a TRIDC4BG001610.1 20 PCGACKFLRRRCVNGCAFAPHFCHEQgAAHFAAIHKVFGASNASKLLMSLPATDRREAAATISYEAQARLHDPVYGCVAHIFALQQQVVNLQA 112 7***********************89************************************************************* PP DUF260 93 elallkee 100 +l++lk++ TRIDC4BG001610.1 113 QLESLKAQ 120 999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
QEYTTSIDQA PGAMTGFSSP CGACKFLRRR CVNGCAFAPH FCHEQGAAHF AAIHKVFGAS 60 NASKLLMSLP ATDRREAAAT ISYEAQARLH DPVYGCVAHI FALQQQVVNL QAQLESLKAQ 120 EPVQGRTNTC SVSSPEEDSI KAKAMAYQKG EARMPQPGHS VKIERERYFG NDAMTSCTSM 180 QYSQDYNSSH VYATDYPASF NDDSIHSSTM FPVDMQEYLQ ESGYYDAEGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	3e-51	LBD family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG001610.1