PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG004040.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 99aa    MW: 10945.9 Da    PI: 11.49
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG004040.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.6e-272271150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien++nr+vtfskRrng++KKA+ELSvLCd+++a+++fs++ +l  +s
  TRIDC4BG004040.1 22 KRIENNTNRHVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSRRLCPFS 71
                      79*****************************************9998776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    
LTSPRLADRP ATTMGRVKLA IKRIENNTNR HVTFSKRRNG LIKKAYELSV LCDIDIALLM  60
FSPSRRLCPF SGRHGSVLLS LISPAQPASL IPVFVSVSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-31MIKC_MADS family protein