PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG012220.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 230aa    MW: 23668.7 Da    PI: 7.5656
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG012220.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.41.3e-292104198
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++ +++l+
  TRIDC4BG012220.2   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTSNWDLC 94 
                       6*********************9999888899************************************************************* PP

            DUF260  89 qlkaelallk 98 
                       q++a+++l++
  TRIDC4BG012220.2  95 QAAADAVLRG 104
                       ****998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTSN WDLCQAAADA VLRGDSLRSL SAVPAAFTER  120
DMAGLYGNVG TNTGSSSSLH SSPENSTSAP ARKRSKNNPG CGAAGGQQVK LPGPVLPSCD  180
LDLCLTPLSS PLAGGRRGGA SDEYSTTTCC EDASGDAAEA GAPPLLNLFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-55LBD family protein