PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG021910.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 139aa MW: 15983.5 Da PI: 8.7492

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG021910.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00072	1	22	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C + F++ L H+++H TRIDC4BG021910.1 1 SCTFCQRDFRSAQALGGHMNVH 22 6*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence
SCTFCQRDFR SAQALGGHMN VHRRDRARLR HGDDDQARQE QADEPHQDDS TSAMYKQLEL 60 FRNPSTTTPS HLSTIIKERN NNKVVVSIAV RDQEAADHQY NDRQDLELSG RRKRRRVDQA 120 PVALASPYGQ GAFLDHSKW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	116	RKRRR
2	113	117	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	3e-14	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG021910.1