PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG026790.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 247aa MW: 27147.4 Da PI: 5.7869

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG026790.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.1	9.9e-19	3	79	22	98
NF-YC 22 PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 P arikki++adedv +i+ +Pvl+s+a elf+ +l rs+ + ++ +tl+ ++++v+r fdfl++iv + TRIDC4BG026790.4 3 PRARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRSYKITLQSGAKTLNSFHLKQCVKRYSSFDFLTEIVNK 79 779**********************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
GSPRARIKKI MQADEDVGKI ALAVPVLVSR ALELFLQDLI DRSYKITLQS GAKTLNSFHL 60 KQCVKRYSSF DFLTEIVNKV PDLGGGESCG DERGLPRRRK FSNGSDPENE EPRSSKMPIR 120 SLNTSPRGRG RGRGRGRGRP PTKRKEIGYV QFEDESSMFA EQSEPLPGDE IVPETNRGNE 180 IIPQSSHPLV EAPSVVTPAV ISKVEKATNH QPDLPMPDAI GGIGVGPSSF GHLTVQVDEE 240 EDYDNED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	PRRRK
2	127	136	RGRGRGRGRG
3	127	137	RGRGRGRGRGR
4	129	138	RGRGRGRGRG
5	129	139	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	8e-44	NF-YC family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG026790.4