PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG040710.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 411aa MW: 43645.6 Da PI: 9.976

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG040710.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.4	6.8e-07	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H TRIDC4BG040710.1 73 YVCEICGQGFQREQNLQMHRRRH 95 9*********************9 PP
2	zf-C2H2	10.8	0.0015	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ TRIDC4BG040710.1 169 WVCARCAKGYAVQSDYKAHLKTC 191 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
VKSHHQMLAP SSTSSSSPSS LQQPPPPPPL VPPPPATDQP SPAKRKRRPP GTPDPDAEVV 60 ALTPRTLLES DRYVCEICGQ GFQREQNLQM HRRRHKVPWR LVKRAPAPSA GEDGGAGTAG 120 GAGATTVPRK RVFVCPEPSC LHHDPAHALG DLVGIKKHFR RKHGGRRQWV CARCAKGYAV 180 QSDYKAHLKT CGTRGHSCDC GRVFSRVESF IEHQDACNSG RMRGEAGAVP SALPMLRPIV 240 IRHPATGVPS TPPPELQLLP AATKAPVNAT PAVFSASHEP HATTKLELSI GPVASSDSVS 300 GADDGREEVM RAMQEKAAAD AERARAREEA AAAERALEEA RRARQRARGE LEKACALRDH 360 AARLLAQVTC HACRQRSFGM VPMGVAAGGD GGHGGSAVAC EALRRGGGLG L

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

VKSHHQMLAP SSTSSSSPSS LQQPPPPPPL VPPPPATDQP SPAKRKRRPP GTPDPDAEVV  60
ALTPRTLLES DRYVCEICGQ GFQREQNLQM HRRRHKVPWR LVKRAPAPSA GEDGGAGTAG  120
GAGATTVPRK RVFVCPEPSC LHHDPAHALG DLVGIKKHFR RKHGGRRQWV CARCAKGYAV  180
QSDYKAHLKT CGTRGHSCDC GRVFSRVESF IEHQDACNSG RMRGEAGAVP SALPMLRPIV  240
IRHPATGVPS TPPPELQLLP AATKAPVNAT PAVFSASHEP HATTKLELSI GPVASSDSVS  300
GADDGREEVM RAMQEKAAAD AERARAREEA AAAERALEEA RRARQRARGE LEKACALRDH  360
AARLLAQVTC HACRQRSFGM VPMGVAAGGD GGHGGSAVAC EALRRGGGLG L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	44	49	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	2e-87	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG040710.1