PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG042920.6
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25969.2 Da    PI: 6.662
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG042920.6genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.24e-27149351
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+iifs +g+l+e+ss
  TRIDC4BG042920.6  1 IENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSS 49
                      8**********************************************96 PP
2K-box100.52.3e-33751611399
             K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       ++e  +qe+ kLk ++e Lq++qR++lGedL++Ls+keL q+e+q++ slk+iRskKn++ll+q+ el+ ke+elq+en++Lrkkl+
  TRIDC4BG042920.6  75 ESEINYQEYLKLKTRVEFLQSSQRNILGEDLGPLSMKELDQIENQIDASLKHIRSKKNQVLLDQLFELKSKEQELQDENNDLRKKLQ 161
                       556789*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS SCMYKTLERY  60
RTCNSNSQEA TPPLESEINY QEYLKLKTRV EFLQSSQRNI LGEDLGPLSM KELDQIENQI  120
DASLKHIRSK KNQVLLDQLF ELKSKEQELQ DENNDLRKKL QDTTSCCGEN AVHMSWQDGG  180
QCSSRVLHPE HDTSMQIGYP RAYMDQLNNR DHVACERPGG GSSAGWI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-67MIKC_MADS family protein