PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG045310.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 233aa MW: 25576.6 Da PI: 6.3107

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG045310.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3e-19	62	115	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+k+r++ + ++ +LA++lgL+++qV vWFqNrRa++k TRIDC4BG045310.1 62 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYK 115 45689************************************************9 PP
2	HD-ZIP_I/II	112.3	3.1e-36	62	153	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e +L+e+l+e TRIDC4BG045310.1 62 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYKSKLIEEEFSKLRAAHDAVVVHNCHLEAELLRLKERLAE 153 9**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MSPEEGERLL FPSFVFPDGF PADDATPAVS GGEQKKAGRQ RRRRRARQAA AGEGAGGDDA 60 AKKRRLSDEQ AQFLEMSFRK ERKLETPRKV QLAAELGLDT KQVAVWFQNR RARYKSKLIE 120 EEFSKLRAAH DAVVVHNCHL EAELLRLKER LAETEEEKNK AMAAAAAATT GGGGGSSPSS 180 SSFSTVTAMV GGQQFGMEEV ETDLTYMSEY AYTNYMMDLA AGGYLGGVYD QFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	65	RRRRRARQAAAGEGAGGDDAAKKRR
2	42	66	RRRRRARQAAAGEGAGGDDAAKKRR
3	43	67	RRRRRARQAAAGEGAGGDDAAKKRR
4	62	83	KKRRLSDEQAQFLEMSFRKERK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	5e-28	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG045310.1