PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG045310.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 190aa MW: 20758 Da PI: 6.9534

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG045310.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2.1e-19	62	115	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+k+r++ + ++ +LA++lgL+++qV vWFqNrRa++k TRIDC4BG045310.3 62 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYK 115 45689************************************************9 PP
2	HD-ZIP_I/II	110.1	1.5e-35	62	145	2	85
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+ev+ TRIDC4BG045310.3 62 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYKSKLIEEEFSKLRAAHDAVVVHNCHLEAEVQ 145 9********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence
MSPEEGERLL FPSFVFPDGF PADDATPAVS GGEQKKAGRQ RRRRRARQAA AGEGAGGDDA 60 AKKRRLSDEQ AQFLEMSFRK ERKLETPRKV QLAAELGLDT KQVAVWFQNR RARYKSKLIE 120 EEFSKLRAAH DAVVVHNCHL EAEVQCNTAE AQGEVGGDGG GEEQGHGGGG GGDNGRRGWQ 180 QPELFVVLDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	65	RRRRRARQAAAGEGAGGDDAAKKRR
2	42	66	RRRRRARQAAAGEGAGGDDAAKKRR
3	43	67	RRRRRARQAAAGEGAGGDDAAKKRR
4	62	83	KKRRLSDEQAQFLEMSFRKERK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	8e-31	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG045310.3