PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG053380.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 169aa    MW: 18195.9 Da    PI: 11.2599
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG053380.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.11.4e-38181181100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrr+Ca++Cv+apyf+ae+ +++fa++hk+FGasn  kll+++ + +r++a+++++yeA+ar+rdPvyG+v++i++lqqq+  l+a
  TRIDC4BG053380.1  18 PCGACKFLRRRCAAECVFAPYFCAEDgASQFAAIHKVFGASNAAKLLQQVAPGDRSEAAATVTYEAQARLRDPVYGCVAHIFALQQQVVALQA 110
                       7***********************9989***************************************************************** PP

            DUF260  93 elallkee 100
                       ++a+++++
  TRIDC4BG053380.1 111 QVAHARTQ 118
                       ***99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
ISTTATMAGA GVTTTGSPCG ACKFLRRRCA AECVFAPYFC AEDGASQFAA IHKVFGASNA  60
AKLLQQVAPG DRSEAAATVT YEAQARLRDP VYGCVAHIFA LQQQVVALQA QVAHARTQAQ  120
LGAATAMHPL LQQQLQQQAW QRRPPALRRV LAARRRDVLR LRRAGGRQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.15e-43LBD family protein