PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG053390.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 157aa    MW: 16894.4 Da    PI: 11.3484
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG053390.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.89.9e-4011110199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkCa++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar+rdPvyG+v++i++lqqq+++l+a
  TRIDC4BG053390.5  11 PCGACKFLRRKCARGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPISDRAEAAVTVSYEAQARLRDPVYGCVAHIFALQQQVMTLQA 103
                       7*************************89***************************************************************** PP

            DUF260  93 elallke 99 
                       +la++++
  TRIDC4BG053390.5 104 QLASTRT 110
                       **99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
RLMSMTGLGS PCGACKFLRR KCARGCVFAP YFCHEQGAAH FAAIHKVFGA SNVSKLLAHL  60
PISDRAEAAV TVSYEAQARL RDPVYGCVAH IFALQQQVMT LQAQLASTRT AATNGPTATA  120
WARRPHSSSA RTAAMAAQRP GTTPSARCWP GRRHRTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.19e-63LBD family protein