PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG053560.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1429aa MW: 158757 Da PI: 5.6644

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG053560.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	1319	1344	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4BG053560.2 1319 FQCEidFCDMTFESRADLRAHERNiC 1344 89********************9877 PP
2	zf-C2H2	11	0.0014	1402	1428	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H TRIDC4BG053560.2 1402 YECLveGCGQTFRYVSDYSRHRRKfnH 1428 889999*****************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1429 aa Download sequence
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXALFTTRHQ 60 ELGTARRGRP PPQVLKQVWQ SGERYTLDQF EAKSRAFAKA HLAGLRDPTP LAVESLFWKA 120 SADRPIYIEY ANDVPGSGFA ASAQSHRRPH KKRRREGAPV DEGEKATGWK LSCSPWNLQA 180 IARAPGSLTR FMPDDVPGVT SPMVYIGMLF SWFAWHIEDH ELHSLNFLHT GAPKTWYAVP 240 GDRAAELEEV IRVHGYGGNP DRLASLAVLG EKTTLMSPEV IVASGLPCCR LVQHPGEFVV 300 TFPRAYHVGF SHGFNCGEAA NFATPQWLKF AKEAAVRRAV MNYLPMLSHQ QLLYLLAVSF 360 ISRTPRELLY GIRTSRLRDR RKEERELLKK LIDNAVLWEP DLLPSSTALH SCSSGPKAPL 420 KVDDVHSIES VPKENCSSDD IASRAGIQPK CMSMDSKSSD AMSTSEAQKL DTDTDDDGDL 480 PFDLSIDSGS LTCVACGILG FPFMAILQPS KKALEDMSLV DIERFKLNCE KENHSNAIPC 540 SPDDGNSGHP VIAKRPSSPV AESNFSHQNA ESDKDGVGLD GPLLPHNNSS HSCSSENTLN 600 PCINTETTET KIPSARFGIE FSKQTGRGDI DAQATESCGN TVDWNITSAF VRPRIFCLQH 660 ALEIEELLEG RGGVHALIIC HADYTKLKAL AISIAEEIEF QFDCKDVPLV NASKSDLHLI 720 NISIDDEGYK EDERDWTTQM GLNMKYFAKL RKETPGCQEQ PPLSFWKRLD ISDKPLPISV 780 VPNLKWLCRR ARTPYRVVGY AANRNATVGP DVVSPAVTKA EMGTSGNAYE NAKEQRTAEQ 840 DALLEPSRLQ EADDVADMHT CSEDIDQDMH CLIGSKRQRT AEQDAPLQPS RLQEADDVVD 900 MHTCSVDNDQ DMHRLIGIPV AVAEYPMVHQ VCEGTVSVST CELDDLVSAS TSDDSVCSAY 960 SQDSPGVSDD FTTEQKCVQS DELTSSVAMS VQQFLLDESM TAEDSSNQEK LGSYNVTSEC 1020 KDKQLQVQQE QENIELCNNA GRNMATVVQV DSSHFPDKAV NLKSAIPTES QHEYPKRDAI 1080 VLEGMQAALT TVVSGENRNS VHTELDSLGI LLGALAEESI LADVPGKDEV DDASLTLMTL 1140 ASIDQSAGDV AHNEVIETSS SSIGASLSCR GRTLTNLASD GSLRIQNAEI QNKQENAEEV 1200 DAWNCQGWKS SRGVLDSSAN SLSETGKSSG TPNTYQPDIL SRSIGSSKRT SIICYVRRKR 1260 KQKRKRESQS VGSFARAPCE RLRPRTKRAV IEEPAEQIET AKPSAAATKG KRSKVVELFQ 1320 CEIDFCDMTF ESRADLRAHE RNICTDESCG KRFQSHKYLK RHQCVHRDER PFKCPWEGCG 1380 MTFKWLWAQT EHIRVHTGER PYECLVEGCG QTFRYVSDYS RHRRKFNHY

Sequence ? help Back to Top

Protein Sequence Length: 1429 aa Download sequence

XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXALFTTRHQ  60
ELGTARRGRP PPQVLKQVWQ SGERYTLDQF EAKSRAFAKA HLAGLRDPTP LAVESLFWKA  120
SADRPIYIEY ANDVPGSGFA ASAQSHRRPH KKRRREGAPV DEGEKATGWK LSCSPWNLQA  180
IARAPGSLTR FMPDDVPGVT SPMVYIGMLF SWFAWHIEDH ELHSLNFLHT GAPKTWYAVP  240
GDRAAELEEV IRVHGYGGNP DRLASLAVLG EKTTLMSPEV IVASGLPCCR LVQHPGEFVV  300
TFPRAYHVGF SHGFNCGEAA NFATPQWLKF AKEAAVRRAV MNYLPMLSHQ QLLYLLAVSF  360
ISRTPRELLY GIRTSRLRDR RKEERELLKK LIDNAVLWEP DLLPSSTALH SCSSGPKAPL  420
KVDDVHSIES VPKENCSSDD IASRAGIQPK CMSMDSKSSD AMSTSEAQKL DTDTDDDGDL  480
PFDLSIDSGS LTCVACGILG FPFMAILQPS KKALEDMSLV DIERFKLNCE KENHSNAIPC  540
SPDDGNSGHP VIAKRPSSPV AESNFSHQNA ESDKDGVGLD GPLLPHNNSS HSCSSENTLN  600
PCINTETTET KIPSARFGIE FSKQTGRGDI DAQATESCGN TVDWNITSAF VRPRIFCLQH  660
ALEIEELLEG RGGVHALIIC HADYTKLKAL AISIAEEIEF QFDCKDVPLV NASKSDLHLI  720
NISIDDEGYK EDERDWTTQM GLNMKYFAKL RKETPGCQEQ PPLSFWKRLD ISDKPLPISV  780
VPNLKWLCRR ARTPYRVVGY AANRNATVGP DVVSPAVTKA EMGTSGNAYE NAKEQRTAEQ  840
DALLEPSRLQ EADDVADMHT CSEDIDQDMH CLIGSKRQRT AEQDAPLQPS RLQEADDVVD  900
MHTCSVDNDQ DMHRLIGIPV AVAEYPMVHQ VCEGTVSVST CELDDLVSAS TSDDSVCSAY  960
SQDSPGVSDD FTTEQKCVQS DELTSSVAMS VQQFLLDESM TAEDSSNQEK LGSYNVTSEC  1020
KDKQLQVQQE QENIELCNNA GRNMATVVQV DSSHFPDKAV NLKSAIPTES QHEYPKRDAI  1080
VLEGMQAALT TVVSGENRNS VHTELDSLGI LLGALAEESI LADVPGKDEV DDASLTLMTL  1140
ASIDQSAGDV AHNEVIETSS SSIGASLSCR GRTLTNLASD GSLRIQNAEI QNKQENAEEV  1200
DAWNCQGWKS SRGVLDSSAN SLSETGKSSG TPNTYQPDIL SRSIGSSKRT SIICYVRRKR  1260
KQKRKRESQS VGSFARAPCE RLRPRTKRAV IEEPAEQIET AKPSAAATKG KRSKVVELFQ  1320
CEIDFCDMTF ESRADLRAHE RNICTDESCG KRFQSHKYLK RHQCVHRDER PFKCPWEGCG  1380
MTFKWLWAQT EHIRVHTGER PYECLVEGCG QTFRYVSDYS RHRRKFNHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1256	1263	VRRKRKQK
2	1258	1267	RKRKQKRKRE
3	1260	1269	RKRKQKRKRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	1e-144	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG053560.2