PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG053560.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1291aa MW: 142987 Da PI: 5.0701

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG053560.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	1181	1206	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4BG053560.4 1181 FQCEidFCDMTFESRADLRAHERNiC 1206 89********************9877 PP
2	zf-C2H2	10.7	0.0016	1234	1258	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4BG053560.4 1234 FKCPweGCGMTFKWLWAQTEHIRVH 1258 89*********************99 PP
3	zf-C2H2	11.1	0.0012	1264	1290	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H TRIDC4BG053560.4 1264 YECLveGCGQTFRYVSDYSRHRRKfnH 1290 889999*****************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1291 aa Download sequence
GAPVDEGEKA TGWKLSCSPW NLQAIARAPG SLTRFMPDDV PGVTSPMVYI GMLFSWFAWH 60 IEDHELHSLN FLHTGAPKTW YAVPGDRAAE LEEVIRVHGY GGNPDRLASL AVLGEKTTLM 120 SPEVIVASGL PCCRLVQHPG EFVVTFPRAY HVGFSHGFNC GEAANFATPQ WLKFAKEAAV 180 RRAVMNYLPM LSHQQLLYLL AVSFISRTPR ELLYGIRTSR LRDRRKEERE LLVKREFLQD 240 MISENELLCS FLKKKLIDNA VLWEPDLLPS STALHSCSSG PKAPLKVDDV HSIESVPKEN 300 CSSDDIASRA GIQPKCMSMD SKSSDAMSTS EAQKLDTDTD DDGDLPFDLS IDSGSLTCVA 360 CGILGFPFMA ILQPSKKALE DMSLVDIERF KLNCEKENHS NAIPCSPDDG NSVIAKRPSS 420 PVAESNFSHQ NAESDKDGVG LDGPLLPHNN SSHSCSSENT LNPCINTETT ETKIPSARFG 480 IEFSKQTGRG DIDAQATESC GNTVDWNITS AFVRPRIFCL QHALEIEELL EGRGGVHALI 540 ICHADYTKLK ALAISIAEEI EFQFDCKDVP LVNASKSDLH LINISIDDEG YKEDERDWTT 600 QMGLNMKYFA KLRKETPGCQ EQPPLSFWKR LDISDKPLPI SVVPNLKWLC RRARTPYRVV 660 GYAANRNATV GPDVVSPAVT KAEMGTSGNA YENAKEQRTA EQDALLEPSR LQEADDVADM 720 HTCSEDIDQD MHCLIGSKRQ RTAEQDAPLQ PSRLQEADDV VDMHTCSVDN DQDMHRLIGI 780 PVAVAEYPMV HQVCEGTVSV STCELDDLVS ASTSDDSVCS AYSQDSPGVS DDFTTEQKCV 840 QSDELTSSVA MSVQQFLLDE SMTAEDSSNQ EKLGSYNVTS ECKDKQLQVQ QEQENIELCN 900 NAGRNMATVV QVDSSHFPDK AVNLKSAIPT ESQHEYPKRD AIVLEGMQAA LTTVVSGENR 960 NSVHTELDSL GILLGALAEE SILADVPGKD EVDDASLTLM TLASIDQSAG DVAHNEVIET 1020 SSSSIGASLS CRGRTLTNLA SDGSLRIQNA EIQNKQENAE EVDAWNCQGW KSSRGVLDSS 1080 ANSLSETGKS SGTPNTYQPD ILSRSIGSSK RTSIICYVRR KRKQKRKRES QSVGSFARAP 1140 CERLRPRTKR AVIEEPAEQI ETAKPSAAAT KGKRSKVVEL FQCEIDFCDM TFESRADLRA 1200 HERNICTDES CGKRFQSHKY LKRHQCVHRD ERPFKCPWEG CGMTFKWLWA QTEHIRVHTG 1260 ERPYECLVEG CGQTFRYVSD YSRHRRKFNH Y

Sequence ? help Back to Top

Protein Sequence Length: 1291 aa Download sequence

GAPVDEGEKA TGWKLSCSPW NLQAIARAPG SLTRFMPDDV PGVTSPMVYI GMLFSWFAWH  60
IEDHELHSLN FLHTGAPKTW YAVPGDRAAE LEEVIRVHGY GGNPDRLASL AVLGEKTTLM  120
SPEVIVASGL PCCRLVQHPG EFVVTFPRAY HVGFSHGFNC GEAANFATPQ WLKFAKEAAV  180
RRAVMNYLPM LSHQQLLYLL AVSFISRTPR ELLYGIRTSR LRDRRKEERE LLVKREFLQD  240
MISENELLCS FLKKKLIDNA VLWEPDLLPS STALHSCSSG PKAPLKVDDV HSIESVPKEN  300
CSSDDIASRA GIQPKCMSMD SKSSDAMSTS EAQKLDTDTD DDGDLPFDLS IDSGSLTCVA  360
CGILGFPFMA ILQPSKKALE DMSLVDIERF KLNCEKENHS NAIPCSPDDG NSVIAKRPSS  420
PVAESNFSHQ NAESDKDGVG LDGPLLPHNN SSHSCSSENT LNPCINTETT ETKIPSARFG  480
IEFSKQTGRG DIDAQATESC GNTVDWNITS AFVRPRIFCL QHALEIEELL EGRGGVHALI  540
ICHADYTKLK ALAISIAEEI EFQFDCKDVP LVNASKSDLH LINISIDDEG YKEDERDWTT  600
QMGLNMKYFA KLRKETPGCQ EQPPLSFWKR LDISDKPLPI SVVPNLKWLC RRARTPYRVV  660
GYAANRNATV GPDVVSPAVT KAEMGTSGNA YENAKEQRTA EQDALLEPSR LQEADDVADM  720
HTCSEDIDQD MHCLIGSKRQ RTAEQDAPLQ PSRLQEADDV VDMHTCSVDN DQDMHRLIGI  780
PVAVAEYPMV HQVCEGTVSV STCELDDLVS ASTSDDSVCS AYSQDSPGVS DDFTTEQKCV  840
QSDELTSSVA MSVQQFLLDE SMTAEDSSNQ EKLGSYNVTS ECKDKQLQVQ QEQENIELCN  900
NAGRNMATVV QVDSSHFPDK AVNLKSAIPT ESQHEYPKRD AIVLEGMQAA LTTVVSGENR  960
NSVHTELDSL GILLGALAEE SILADVPGKD EVDDASLTLM TLASIDQSAG DVAHNEVIET  1020
SSSSIGASLS CRGRTLTNLA SDGSLRIQNA EIQNKQENAE EVDAWNCQGW KSSRGVLDSS  1080
ANSLSETGKS SGTPNTYQPD ILSRSIGSSK RTSIICYVRR KRKQKRKRES QSVGSFARAP  1140
CERLRPRTKR AVIEEPAEQI ETAKPSAAAT KGKRSKVVEL FQCEIDFCDM TFESRADLRA  1200
HERNICTDES CGKRFQSHKY LKRHQCVHRD ERPFKCPWEG CGMTFKWLWA QTEHIRVHTG  1260
ERPYECLVEG CGQTFRYVSD YSRHRRKFNH Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1118	1125	VRRKRKQK
2	1120	1129	RKRKQKRKRE
3	1122	1131	RKRKQKRKRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	1e-119	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG053560.4