PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG053560.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 900aa MW: 99920.5 Da PI: 5.0358

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG053560.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00014	790	815	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4BG053560.7 790 FQCEidFCDMTFESRADLRAHERNiC 815 89********************9877 PP
2	zf-C2H2	11.3	0.0011	843	867	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4BG053560.7 843 FKCPweGCGMTFKWLWAQTEHIRVH 867 89*********************99 PP
3	zf-C2H2	11.7	0.00082	873	899	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H TRIDC4BG053560.7 873 YECLveGCGQTFRYVSDYSRHRRKfnH 899 889999*****************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence
MFCFCMCEYL TKVSPCLPGH PVIAKRPSSP VAESNFSHQN AESDKDGVGL DGPLLPHNNS 60 SHSCSSENTL NPCINTETTE TKIPSARFGI EFSKQTGRGD IDAQATESCG NTVDWNITSA 120 FVRPRIFCLQ HALEIEELLE GRGGVHALII CHADYTKLKA LAISIAEEIE FQFDCKDVPL 180 VNASKSDLHL INISIDDEGY KEDERDWTTQ MGLNMKYFAK LRKETPGCQE QPPLSFWKRL 240 DISDKPLPIS VVPNLKWLCR RARTPYRVVG YAANRNATVG PDVVSPAVTK AEMGTSGNAY 300 ENAKEQRTAE QDALLEPSRL QEADDVADMH TCSEDIDQDM HCLIGSKRQR TAEQDAPLQP 360 SRLQEADDVV DMHTCSVDND QDMHRLIGIP VAVAEYPMVH QVCEGTVSVS TCELDDLVSA 420 STSDDSVCSA YSQDSPGVSD DFTTEQKCVQ SDELTSSVAM SVQQFLLDES MTAEDSSNQE 480 KLGSYNVTSE CKDKQLQVQQ EQENIELCNN AGRNMATVVQ VDSSHFPDKA VNLKSAIPTE 540 SQHEYPKRDA IVLEGMQAAL TTVVSGENRN SVHTELDSLG ILLGALAEES ILADVPGKDE 600 VDDASLTLMT LASIDQSAGD VAHNEVIETS SSSIGASLSC RGRTLTNLAS DGSLRIQNAE 660 IQNKQENAEE VDAWNCQGWK SSRGVLDSSA NSLSETGKSS GTPNTYQPDI LSRSIGSSKR 720 TSIICYVRRK RKQKRKRESQ SVGSFARAPC ERLRPRTKRA VIEEPAEQIE TAKPSAAATK 780 GKRSKVVELF QCEIDFCDMT FESRADLRAH ERNICTDESC GKRFQSHKYL KRHQCVHRDE 840 RPFKCPWEGC GMTFKWLWAQ TEHIRVHTGE RPYECLVEGC GQTFRYVSDY SRHRRKFNHY

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence

MFCFCMCEYL TKVSPCLPGH PVIAKRPSSP VAESNFSHQN AESDKDGVGL DGPLLPHNNS  60
SHSCSSENTL NPCINTETTE TKIPSARFGI EFSKQTGRGD IDAQATESCG NTVDWNITSA  120
FVRPRIFCLQ HALEIEELLE GRGGVHALII CHADYTKLKA LAISIAEEIE FQFDCKDVPL  180
VNASKSDLHL INISIDDEGY KEDERDWTTQ MGLNMKYFAK LRKETPGCQE QPPLSFWKRL  240
DISDKPLPIS VVPNLKWLCR RARTPYRVVG YAANRNATVG PDVVSPAVTK AEMGTSGNAY  300
ENAKEQRTAE QDALLEPSRL QEADDVADMH TCSEDIDQDM HCLIGSKRQR TAEQDAPLQP  360
SRLQEADDVV DMHTCSVDND QDMHRLIGIP VAVAEYPMVH QVCEGTVSVS TCELDDLVSA  420
STSDDSVCSA YSQDSPGVSD DFTTEQKCVQ SDELTSSVAM SVQQFLLDES MTAEDSSNQE  480
KLGSYNVTSE CKDKQLQVQQ EQENIELCNN AGRNMATVVQ VDSSHFPDKA VNLKSAIPTE  540
SQHEYPKRDA IVLEGMQAAL TTVVSGENRN SVHTELDSLG ILLGALAEES ILADVPGKDE  600
VDDASLTLMT LASIDQSAGD VAHNEVIETS SSSIGASLSC RGRTLTNLAS DGSLRIQNAE  660
IQNKQENAEE VDAWNCQGWK SSRGVLDSSA NSLSETGKSS GTPNTYQPDI LSRSIGSSKR  720
TSIICYVRRK RKQKRKRESQ SVGSFARAPC ERLRPRTKRA VIEEPAEQIE TAKPSAAATK  780
GKRSKVVELF QCEIDFCDMT FESRADLRAH ERNICTDESC GKRFQSHKYL KRHQCVHRDE  840
RPFKCPWEGC GMTFKWLWAQ TEHIRVHTGE RPYECLVEGC GQTFRYVSDY SRHRRKFNHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	727	734	VRRKRKQK
2	729	738	RKRKQKRKRE
3	731	740	RKRKQKRKRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	4e-52	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG053560.7