PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG054720.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 345aa MW: 37624.7 Da PI: 6.964

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG054720.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.5	1.4e-12	76	124	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ + r++lg+f +e Aa+a++ a+++++g TRIDC4BG054720.1 76 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFADEESAARAYDVAALRFRG 124 689*9788.8*****3.....5***********************98 PP
2	B3	96.3	1.9e-30	195	286	1	84
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h g++ ++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD+v+F++ TRIDC4BG054720.1 195 FEKAVTPSDVGKLNRLVVPKQHAEKHfppttaaaTGSNGKGLLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLCAGDTVTFSR 286 89**************************999955667899**********************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
WPTEMASFQH LFLTILRSGH KSRHLRNDHS ACQLSPPMAS SKPTNPEIDN GMECSSPESG 60 AEDAVESSSP APAPSSRFKG VVPQPNGRWG AQIYEKHSRV WLGTFADEES AARAYDVAAL 120 RFRGRDAVTN YQHPLAAEGA SSSSTSELAF LADHSKAEIV DMLRKHTYAD ELRQGLRRGH 180 GRAQPTPAWA REFLFEKAVT PSDVGKLNRL VVPKQHAEKH FPPTTAAATG SNGKGLLLNF 240 EDGEGKVWRF RYSYWNSSQS YVLTKGWSRF VREKGLCAGD TVTFSRSAYV MNDTDEQLFI 300 DYKQSNKNDE AADAATADEN EAGHVAVKLF GVDIGGGGMG GSSGG

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

WPTEMASFQH LFLTILRSGH KSRHLRNDHS ACQLSPPMAS SKPTNPEIDN GMECSSPESG  60
AEDAVESSSP APAPSSRFKG VVPQPNGRWG AQIYEKHSRV WLGTFADEES AARAYDVAAL  120
RFRGRDAVTN YQHPLAAEGA SSSSTSELAF LADHSKAEIV DMLRKHTYAD ELRQGLRRGH  180
GRAQPTPAWA REFLFEKAVT PSDVGKLNRL VVPKQHAEKH FPPTTAAATG SNGKGLLLNF  240
EDGEGKVWRF RYSYWNSSQS YVLTKGWSRF VREKGLCAGD TVTFSRSAYV MNDTDEQLFI  300
DYKQSNKNDE AADAATADEN EAGHVAVKLF GVDIGGGGMG GSSGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25730.1	1e-96	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG054720.1