PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG058350.12

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 254aa MW: 28960.4 Da PI: 10.1319

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG058350.12	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.6	3.4e-28	81	131	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+++fs++g+lye+ s TRIDC4BG058350.12 81 KRIENPTSRQVTFSKRRGGLLKKAFELSVLCDAEVALVVFSPRGRLYEFTS 131 79***********************************************75 PP
2	K-box	56.8	9.5e-20	153	243	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++++e+ + +++ L k+++ L+ + +llG++Le++s++eLq+Le ++eksl iR+ K++ + eq+++l++ke l+++n++L ++++ TRIDC4BG058350.12 153 TVQQDMEKIKADAEGLSKKLDALEACKSKLLGQNLEECSIEELQSLEVKIEKSLLGIRAMKTRRFEEQLSTLRQKEMTLRQHNEELYSQVK 243 56788999******************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
PSSSRGWAGV FLFSPSPRRP NWDNSTHLLF TSPLPSPLCV RSAGRLIGGG RFFWFGLVPD 60 RICGWEERRG AKMVRGKTQM KRIENPTSRQ VTFSKRRGGL LKKAFELSVL CDAEVALVVF 120 SPRGRLYEFT SSSMKNTIER YKTVTKDNMS RQTVQQDMEK IKADAEGLSK KLDALEACKS 180 KLLGQNLEEC SIEELQSLEV KIEKSLLGIR AMKTRRFEEQ LSTLRQKEMT LRQHNEELYS 240 QVKMDGQSNC CLVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	7e-65	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG058350.12