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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC4BG058410.3 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | bHLH | ||||||||
| Protein Properties | Length: 283aa MW: 30026.4 Da PI: 9.8931 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 44 | 4.1e-14 | 105 | 156 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+ +N+ ++ Lr l+P++ + ++ + a+++ A++Y+k+L+
TRIDC4BG058410.3 105 QRMTHIAVERNRRRLMNDHLASLRALIPSD---YIPRGDQATVVGGAIDYVKQLE 156
79****************************...9*******************96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 283 aa Download sequence |
VVVVMDQCWA DQAAASASAA QVPFLALLQG AAMGDGRPGV KRESYGAAAC RPAASDVDLL 60 ESCVTQLPVP PVVEAPAAKR RKRPRARPRA PPPEKRKKPE EAECQRMTHI AVERNRRRLM 120 NDHLASLRAL IPSDYIPRGD QATVVGGAID YVKQLEQQLV ALQALAAAQR GEGPVGTAAT 180 AASDGVFVSP QYTSFSQAGG VGSGVDVEAM AAVGGHVRLR VAGRRWPGRL VRTVAAMENL 240 RMAVLHLAVT SVGHDAVVYC FNLKVANQSS QSYTGLTSRL DFA |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 79 | 97 | KRRKRPRARPRAPPPEKRK |
| 2 | 79 | 98 | KRRKRPRARPRAPPPEKRKK |
| 3 | 80 | 98 | KRRKRPRARPRAPPPEKRK |
| 4 | 80 | 99 | KRRKRPRARPRAPPPEKRKK |
| 5 | 81 | 99 | KRRKRPRARPRAPPPEKRK |
| 6 | 81 | 100 | KRRKRPRARPRAPPPEKRKK |
| 7 | 85 | 98 | RARPRAPPPEKRKK |
| 8 | 106 | 117 | RMTHIAVERNRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G46810.1 | 2e-35 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC4BG058410.3 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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