PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG003850.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 233aa    MW: 26210 Da    PI: 9.5392
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG003850.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1879.5e-585120622170
             YABBY  22 lavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkee...lleelkveeenlksnv..ekeesastsvsseklsenedee 108
                       + vsvP +s++++vtvrCGhCt+llsv+l+ +++  ++   +++es   +   +    +++++ ++  +  ++++s+s++ ++ ++  +++++
  TRIDC5AG003850.1  51 VQVSVPGNSMLNIVTVRCGHCTNLLSVSLRGQMHSpVPPAPQVQESSLSKpngMNSFIRDHSSVYNNPEfgSSSSSSSSKFRMPTMMFSSQND 143
                       579**************************9877542666677777766554664444444444444333113333444444555555555555 PP

             YABBY 109 vprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       + + +    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  TRIDC5AG003850.1 144 LLQEQTlHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 206
                       555444479****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
YTPGLKSNRR PFPIHLDLWF PPPCTCLFAL DQHMLWILTY GWLILGILVC VQVSVPGNSM  60
LNIVTVRCGH CTNLLSVSLR GQMHSPVPPA PQVQESSLSK PNGMNSFIRD HSSVYNNPEF  120
GSSSSSSSSK FRMPTMMFSS QNDLLQEQTL HARPPEKRQR VPSAYNRFIK EEIRRIKANN  180
PDISHREAFS TAAKNWAHYP NIHFGLNPER DDGKRLAVDD AAPAAKKIHG FCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.17e-47YABBY family protein