PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG003850.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 174aa    MW: 19489 Da    PI: 10.1115
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG003850.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY174.47.4e-54114731170
             YABBY  31 lfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkee...lleelkveeenlksnv..ekeesastsvsseklsenedeevprvpp.vi 116
                       ++++vtvrCGhCt+llsv+l+ +++  ++   +++es   +   +    +++++ ++  +  ++++s+s++ ++ ++  ++++++ + +    
  TRIDC5AG003850.2   1 MLNIVTVRCGHCTNLLSVSLRGQMHSpVPPAPQVQESSLSKpngMNSFIRDHSSVYNNPEfgSSSSSSSSKFRMPTMMFSSQNDLLQEQTlHA 93 
                       579*****************9877542666677777766554664444444444444333113333444444555555555555555444479 PP

             YABBY 117 rPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  TRIDC5AG003850.2  94 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 147
                       ****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MLNIVTVRCG HCTNLLSVSL RGQMHSPVPP APQVQESSLS KPNGMNSFIR DHSSVYNNPE  60
FGSSSSSSSS KFRMPTMMFS SQNDLLQEQT LHARPPEKRQ RVPSAYNRFI KEEIRRIKAN  120
NPDISHREAF STAAKNWAHY PNIHFGLNPE RDDGKRLAVD DAAPAAKKIH GFCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.12e-45YABBY family protein