PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG007580.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 153aa MW: 16523.2 Da PI: 9.0412

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG007580.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.9	7.7e-14	10	34	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+r+A+ VRC++CdtV TRIDC5AG007580.3 10 CVGCRTLLMYTRNATTVRCSCCDTV 34 ************************9 PP
2	zf-LSD1	49.3	8e-16	51	75	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GA+sV+Ca+C+++ TRIDC5AG007580.3 51 CGQCQTVLMYPYGASSVKCAICNFI 75 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence
QGMEMAQLIC VGCRTLLMYT RNATTVRCSC CDTVNLARPA PPVNSIAHVN CGQCQTVLMY 60 PYGASSVKCA ICNFITNIGM NTVRPLPPTM HAPNGISYSV PSTSAPSAQS QNVTVVVENP 120 MTVDDKGKLG EQRRSRGYVR REKVAKHVSA CTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	4e-38	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG007580.3