PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG007580.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 142aa MW: 14923.4 Da PI: 8.4923

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG007580.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.1	6.9e-14	9	33	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+r+A+ VRC++CdtV TRIDC5AG007580.4 9 CVGCRTLLMYTRNATTVRCSCCDTV 33 ************************9 PP
2	zf-LSD1	49.5	7.1e-16	50	74	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GA+sV+Ca+C+++ TRIDC5AG007580.4 50 CGQCQTVLMYPYGASSVKCAICNFI 74 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence
GMEMAQLICV GCRTLLMYTR NATTVRCSCC DTVNLARPAP PVNSIAHVNC GQCQTVLMYP 60 YGASSVKCAI CNFITNIGMN TVRPLPPTMH APNGISYSVP STSAPSAQSQ NVTVVVENPM 120 TVDDKGKLVS NVVVGVTSGG KK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	8e-36	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG007580.4