PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG020080.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GATA

Protein Properties

Length: 495aa MW: 53387.7 Da PI: 9.5098

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG020080.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	35.4	1.5e-11	159	193	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C++ +Tp+ R+gp g tLCnaCG+ y k+g+ TRIDC5AG020080.4 159 CLHCKAVETPQRRSGPMGRGTLCNACGVWYSKNGT 193 99******************************997 PP
2	GATA	31.9	1.8e-10	249	283	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+++ plW +g+ g +++C aCG++y+k +l TRIDC5AG020080.4 249 CLHCGSSDPPLWIEGSMGRREVCTACGMRYKKGRL 283 99******************************986 PP
3	GATA	55	1.1e-17	353	387	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++Tp+WR+gp g tLCnaCG++yr +l TRIDC5AG020080.4 353 CQHCGSSETPQWREGPKGRATLCNACGVRYRQGRL 387 *******************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
LLSVILSSAA AARSQPPSMA TAEEGEGGEP PGLGRGRCPR FRRSEATRGM AGGGGVGGKE 60 DGGTEPLLLS VLALPATALP AVVSRLEAAV PRKARSYLPR NVPSAWWSLR IPFIQPLPPA 120 GDPANEEEGR RFPRTQRVQV APSLDPGTAD KPPKRLKRCL HCKAVETPQR RSGPMGRGTL 180 CNACGVWYSK NGTLPEHRPV ASPIVDSPLE SPIWEPEVPG AIYLVRKSAT ERMPPRTEAA 240 PAPRPGTSCL HCGSSDPPLW IEGSMGRREV CTACGMRYKK GRLLPECRPA ECSVTDSQQE 300 SPVINSPPES PIWEPEAPPS VHLPRKPSKK KKRRRSRSEA PSAPWPANKG KRCQHCGSSE 360 TPQWREGPKG RATLCNACGV RYRQGRLLPE YRPVASPTFV PTKHANTHRK VLQLHRTRQS 420 NDEHPSPLPA DSVTNLPPIR NELPTTSTAG LASEDPTDAP GYTDNPINVP SSLDSLLLDG 480 PSAPLIVESE DFAIS

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

LLSVILSSAA AARSQPPSMA TAEEGEGGEP PGLGRGRCPR FRRSEATRGM AGGGGVGGKE  60
DGGTEPLLLS VLALPATALP AVVSRLEAAV PRKARSYLPR NVPSAWWSLR IPFIQPLPPA  120
GDPANEEEGR RFPRTQRVQV APSLDPGTAD KPPKRLKRCL HCKAVETPQR RSGPMGRGTL  180
CNACGVWYSK NGTLPEHRPV ASPIVDSPLE SPIWEPEVPG AIYLVRKSAT ERMPPRTEAA  240
PAPRPGTSCL HCGSSDPPLW IEGSMGRREV CTACGMRYKK GRLLPECRPA ECSVTDSQQE  300
SPVINSPPES PIWEPEAPPS VHLPRKPSKK KKRRRSRSEA PSAPWPANKG KRCQHCGSSE  360
TPQWREGPKG RATLCNACGV RYRQGRLLPE YRPVASPTFV PTKHANTHRK VLQLHRTRQS  420
NDEHPSPLPA DSVTNLPPIR NELPTTSTAG LASEDPTDAP GYTDNPINVP SSLDSLLLDG  480
PSAPLIVESE DFAIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	329	334	KKKKRR
2	329	335	KKKKRRR
3	330	336	KKKKRRR
4	330	335	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	3e-30	GATA family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG020080.4