PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG020500.10

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 511aa MW: 56470.5 Da PI: 8.1021

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG020500.10	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	8.9e-10	113	135	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5AG020500.10 113 PDCTYYLKFGTCRFGMKCKFNHP 135 89********************8 PP
2	zf-CCCH	26.5	1.1e-08	232	254	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5AG020500.10 232 QEECKYYSTPGGCKFGESCRYLH 254 699*******************9 PP
3	zf-CCCH	28.6	2.4e-09	269	291	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5AG020500.10 269 KECPYYMRIGSCKFATNCRFHHP 291 68********************9 PP
4	zf-CCCH	19.2	2.2e-06	417	440	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++f ++G+Ck+ ++Ck++H++ TRIDC5AG020500.10 417 LECQHFVKSGFCKFKAKCKYHHPR 440 58********************96 PP
5	zf-CCCH	26	1.6e-08	462	486	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ r+G Ck+G+ C ++H++ TRIDC5AG020500.10 462 QPVCTYYERYGVCKFGPACMYNHPF 486 789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
CSRRRRYLSL SPRRRMADAD AKAPPKSNLD ADLIASISPS SNSSGARNAV AIESQFADLA 60 ISDELPKPSG WGDDAVLGIA GSDEITGEIT GGKVQPVATA DSRPRFPQRH AEPDCTYYLK 120 FGTCRFGMKC KFNHPARKKK NRVKASGSSS SGSNDISNKA FPPDDDQTPK EEYEDLVPNI 180 SAEVDLLGRM EAMQLKIADE TEKGFYLKKF KETEQKVAKE KRKETVSEGS AQEECKYYST 240 PGGCKFGESC RYLHYEGKER KTEVAKGGKE CPYYMRIGSC KFATNCRFHH PDPSNVVSRD 300 PMLEHENGDI PQQNVQASSQ LNVPVWSADQ RALNEHCAPF LAPASSYSAG MIPPRGMYPS 360 PEWSGYHQVP LGPYYPPGIA FHHFPTPPVN HPMYRGADVP GHQELPSDEY PERPGQLECQ 420 HFVKSGFCKF KAKCKYHHPR SLVPPPTAGA LSPLGLPLRS DQPVCTYYER YGVCKFGPAC 480 MYNHPFNFGH PVSAAGPPLS AQYLTSGNYT V

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

CSRRRRYLSL SPRRRMADAD AKAPPKSNLD ADLIASISPS SNSSGARNAV AIESQFADLA  60
ISDELPKPSG WGDDAVLGIA GSDEITGEIT GGKVQPVATA DSRPRFPQRH AEPDCTYYLK  120
FGTCRFGMKC KFNHPARKKK NRVKASGSSS SGSNDISNKA FPPDDDQTPK EEYEDLVPNI  180
SAEVDLLGRM EAMQLKIADE TEKGFYLKKF KETEQKVAKE KRKETVSEGS AQEECKYYST  240
PGGCKFGESC RYLHYEGKER KTEVAKGGKE CPYYMRIGSC KFATNCRFHH PDPSNVVSRD  300
PMLEHENGDI PQQNVQASSQ LNVPVWSADQ RALNEHCAPF LAPASSYSAG MIPPRGMYPS  360
PEWSGYHQVP LGPYYPPGIA FHHFPTPPVN HPMYRGADVP GHQELPSDEY PERPGQLECQ  420
HFVKSGFCKF KAKCKYHHPR SLVPPPTAGA LSPLGLPLRS DQPVCTYYER YGVCKFGPAC  480
MYNHPFNFGH PVSAAGPPLS AQYLTSGNYT V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	5e-57	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG020500.10