PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG020500.12

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 530aa MW: 58426.7 Da PI: 7.3627

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG020500.12	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.9	9.3e-10	96	118	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5AG020500.12 96 PDCTYYLKFGTCRFGMKCKFNHP 118 89********************8 PP
2	zf-CCCH	26.4	1.2e-08	239	261	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5AG020500.12 239 QEECKYYSTPGGCKFGESCRYLH 261 699*******************9 PP
3	zf-CCCH	29.1	1.7e-09	288	310	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5AG020500.12 288 KECPYYMRIGSCKFATNCRFHHP 310 79********************9 PP
4	zf-CCCH	19.1	2.3e-06	436	459	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++f ++G+Ck+ ++Ck++H++ TRIDC5AG020500.12 436 LECQHFVKSGFCKFKAKCKYHHPR 459 58********************96 PP
5	zf-CCCH	25.9	1.7e-08	481	505	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ r+G Ck+G+ C ++H++ TRIDC5AG020500.12 481 QPVCTYYERYGVCKFGPACMYNHPF 505 789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
DADAKAPPKS NLDADLIASI SPSSNSSGAR NAVAIESQFA DLAISDELPK PSGWGDDAVL 60 GIAGSDEITG EITGGKVQPV ATADSRPRFP QRHAEPDCTY YLKFGTCRFG MKCKFNHPAR 120 KKKNRVKASG SSSSGSNDIS NKAFPPDDDQ TPKEEYEDLV PNISAEVDLL GFVDKENTSN 180 LINLNRTSHE KGRMEAMQLK IADETEKGFY LKKFKETEQK ILKVAKEKRK ETVSEGSAQE 240 ECKYYSTPGG CKFGESCRYL HYEGKERKTE VAKVELNFLG LPLRPGGKEC PYYMRIGSCK 300 FATNCRFHHP DPSNVVSRDP MLEHENGDIP QQNVQASSQL NVPVWSADQR ALNEHCAPFL 360 APASSYSAGM IPPRGMYPSP EWSGYHQVPL GPYYPPGIAF HHFPTPPVNH PMYRGADVPG 420 HQELPSDEYP ERPGQLECQH FVKSGFCKFK AKCKYHHPRS LVPPPTAGAL SPLGLPLRSD 480 QPVCTYYERY GVCKFGPACM YNHPFNFGHP VSAAGPPLSA QYLTSGNYTV

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

DADAKAPPKS NLDADLIASI SPSSNSSGAR NAVAIESQFA DLAISDELPK PSGWGDDAVL  60
GIAGSDEITG EITGGKVQPV ATADSRPRFP QRHAEPDCTY YLKFGTCRFG MKCKFNHPAR  120
KKKNRVKASG SSSSGSNDIS NKAFPPDDDQ TPKEEYEDLV PNISAEVDLL GFVDKENTSN  180
LINLNRTSHE KGRMEAMQLK IADETEKGFY LKKFKETEQK ILKVAKEKRK ETVSEGSAQE  240
ECKYYSTPGG CKFGESCRYL HYEGKERKTE VAKVELNFLG LPLRPGGKEC PYYMRIGSCK  300
FATNCRFHHP DPSNVVSRDP MLEHENGDIP QQNVQASSQL NVPVWSADQR ALNEHCAPFL  360
APASSYSAGM IPPRGMYPSP EWSGYHQVPL GPYYPPGIAF HHFPTPPVNH PMYRGADVPG  420
HQELPSDEYP ERPGQLECQH FVKSGFCKFK AKCKYHHPRS LVPPPTAGAL SPLGLPLRSD  480
QPVCTYYERY GVCKFGPACM YNHPFNFGHP VSAAGPPLSA QYLTSGNYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	2e-62	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG020500.12