PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG020500.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 525aa MW: 58018.4 Da PI: 8.1021

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG020500.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	9.2e-10	115	137	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5AG020500.3 115 PDCTYYLKFGTCRFGMKCKFNHP 137 89********************8 PP
2	zf-CCCH	26.5	1.1e-08	234	256	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5AG020500.3 234 QEECKYYSTPGGCKFGESCRYLH 256 699*******************9 PP
3	zf-CCCH	29.1	1.7e-09	283	305	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5AG020500.3 283 KECPYYMRIGSCKFATNCRFHHP 305 79********************9 PP
4	zf-CCCH	19.1	2.3e-06	431	454	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++f ++G+Ck+ ++Ck++H++ TRIDC5AG020500.3 431 LECQHFVKSGFCKFKAKCKYHHPR 454 58********************96 PP
5	zf-CCCH	25.9	1.7e-08	476	500	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ r+G Ck+G+ C ++H++ TRIDC5AG020500.3 476 QPVCTYYERYGVCKFGPACMYNHPF 500 789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
PTCSRRRRYL SLSPRRRMAD ADAKAPPKSN LDADLIASIS PSSNSSGARN AVAIESQFAD 60 LAISDELPKP SGWGDDAVLG IAGSDEITGE ITGGKVQPVA TADSRPRFPQ RHAEPDCTYY 120 LKFGTCRFGM KCKFNHPARK KKNRVKASGS SSSGSNDISN KAFPPDDDQT PKEEYEDLVP 180 NISAEVDLLG RMEAMQLKIA DETEKGFYLK KFKETEQKVA KEKRKETVSE GSAQEECKYY 240 STPGGCKFGE SCRYLHYEGK ERKTEVAKVE LNFLGLPLRP GGKECPYYMR IGSCKFATNC 300 RFHHPDPSNV VSRDPMLEHE NGDIPQQNVQ ASSQLNVPVW SADQRALNEH CAPFLAPASS 360 YSAGMIPPRG MYPSPEWSGY HQVPLGPYYP PGIAFHHFPT PPVNHPMYRG ADVPGHQELP 420 SDEYPERPGQ LECQHFVKSG FCKFKAKCKY HHPRSLVPPP TAGALSPLGL PLRSDQPVCT 480 YYERYGVCKF GPACMYNHPF NFGHPVSAAG PPLSAQYLTS GNYTV

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

PTCSRRRRYL SLSPRRRMAD ADAKAPPKSN LDADLIASIS PSSNSSGARN AVAIESQFAD  60
LAISDELPKP SGWGDDAVLG IAGSDEITGE ITGGKVQPVA TADSRPRFPQ RHAEPDCTYY  120
LKFGTCRFGM KCKFNHPARK KKNRVKASGS SSSGSNDISN KAFPPDDDQT PKEEYEDLVP  180
NISAEVDLLG RMEAMQLKIA DETEKGFYLK KFKETEQKVA KEKRKETVSE GSAQEECKYY  240
STPGGCKFGE SCRYLHYEGK ERKTEVAKVE LNFLGLPLRP GGKECPYYMR IGSCKFATNC  300
RFHHPDPSNV VSRDPMLEHE NGDIPQQNVQ ASSQLNVPVW SADQRALNEH CAPFLAPASS  360
YSAGMIPPRG MYPSPEWSGY HQVPLGPYYP PGIAFHHFPT PPVNHPMYRG ADVPGHQELP  420
SDEYPERPGQ LECQHFVKSG FCKFKAKCKY HHPRSLVPPP TAGALSPLGL PLRSDQPVCT  480
YYERYGVCKF GPACMYNHPF NFGHPVSAAG PPLSAQYLTS GNYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	2e-67	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG020500.3