PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG025380.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 155aa    MW: 17331.7 Da    PI: 7.2071
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG025380.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601407.9e-4481071100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck+lrr+Ca+dCv+apyfp e+p++fa vh++FGasnv+k+l++lp  +r da+sslvyeA ar+rdPvyG++g i+ lqqq++ql+++
  TRIDC5AG025380.4   8 PCASCKLLRRRCARDCVFAPYFPPEDPHRFATVHRVFGASNVSKMLQELPAAQRADAVSSLVYEATARMRDPVYGCAGAISYLQQQVSQLQVQ 100
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  TRIDC5AG025380.4 101 LAVAQAE 107
                       **99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
QTGSSATPCA SCKLLRRRCA RDCVFAPYFP PEDPHRFATV HRVFGASNVS KMLQELPAAQ  60
RADAVSSLVY EATARMRDPV YGCAGAISYL QQQVSQLQVQ LAVAQAELQQ RQVQQQQQMQ  120
MDDDDKAYSS LVMQNDLMST LLLQEACLKK ESLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-52LBD family protein