PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG038950.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 249aa MW: 26654.3 Da PI: 4.3963

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG038950.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.9e-19	32	85	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k TRIDC5AG038950.4 32 KKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 85 45689************************************************9 PP
2	HD-ZIP_I/II	133.3	8.6e-43	31	123	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls+eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L++++e+L +e+++ TRIDC5AG038950.4 31 EKKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYNALRHSYDALRVDHDALRRDKEALLAEVRA 123 69*************************************************************************************999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MYGVVGMEAD GDAEEEMMAC GGGGGGCGGG EKKRRLSAEQ VRALERSFEV ENKLEPERKA 60 RLARDLGLQP RQVAVWFQNR RARWKTKQLE RDYNALRHSY DALRVDHDAL RRDKEALLAE 120 VRAAHGKLGD EEAAASFTSV KEEPAASDGP PPAGMGSSDS DSSGVLNDTD ATGATPTEEA 180 PAPDMGTLLG GPGAAGAAAA GHGQVFLHGN FLKVEEDETG FLDDEEPCGG FFADEPPLAW 240 WTEPTDPWK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	63	ERKARLA
2	80	88	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	1e-42	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG038950.4