PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG043000.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 139aa MW: 16015.5 Da PI: 10.9067

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG043000.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	101.3	3.6e-32	36	86	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s TRIDC5AG043000.3 36 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 86 79***********************************************96 PP
2	K-box	15	1e-06	112	139	9	36
K-box 9 leeakaeslqqelakLkkeienLqreqR 36 +e++ +s+++e+ kLk+++enLqr+qR TRIDC5AG043000.3 112 KENELVQSSRNEYLKLKARVENLQRTQR 139 45667899******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence
VARRRRRRRR AIDLELAVPD AAAGGDGMGR GRVELKRIEN KINRQVTFAK RRNGLLKKAY 60 ELSVLCDAEV ALIIFSNRGK LYEFCSGRCM PKTLERYQKC SYGGPDTAIQ NKENELVQSS 120 RNEYLKLKAR VENLQRTQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	8	RRRRRR
2	3	9	RRRRRRR
3	3	10	RRRRRRRR
4	4	9	RRRRRR
5	4	10	RRRRRRR
6	4	11	RRRRRRRR
7	5	10	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	2e-52	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG043000.3