PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG043000.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 195aa    MW: 22989.6 Da    PI: 10.3
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG043000.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.47e-32959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  TRIDC5AG043000.4  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                      79***********************************************96 PP
2K-box70.45.6e-2485145969
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                       +e++  +s+++e+ kLk+++enLqr+qR+llGedL+sL +k+L+qLe+qL++sl++iRs++
  TRIDC5AG043000.4  85 KENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGSLGIKDLEQLEKQLDSSLRHIRSTR 145
                       45667899**************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG  60
RCMPKTLERY QKCSYGGPDT AIQNKENELV QSSRNEYLKL KARVENLQRT QRNLLGEDLG  120
SLGIKDLEQL EKQLDSSLRH IRSTRVIDCF RNDHNAEARR IISLHYLHQK YRLFCTPSVR  180
NYLSRKWMYL VLKYV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.13e-73MIKC_MADS family protein