PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG047450.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 269aa MW: 29856.7 Da PI: 5.0488

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG047450.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.6	2.4e-12	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l + g+ +W+++++ g+ R++k+c++rw +yl TRIDC5AG047450.3 14 RGPWTAEEDRKLMAFILGNAGRcCWRAVPKLAGLLRCGKSCRLRWTNYL 62 89***********99998889******99**********97 PP
2	Myb_DNA-binding	54.4	2.9e-17	71	112	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T +E+ l vd++++lG++ W++Ia++++ gRt++++k++w+++ TRIDC5AG047450.3 71 LTDDEERLVVDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 112 699**************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MGRQPCCDKL GVKRGPWTAE EDRKLMAFIL GNAGRCCWRA VPKLAGLLRC GKSCRLRWTN 60 YLRPDLKRGL LTDDEERLVV DLHAKLGNRW SKIAAKLPGR TDNEIKNHWN THIKKKLIKM 120 GIDPITHVPL EVRKQPQQAS LSTMSAQSST ITIEDKDASS VGGESSPPNL SGTNTDNTTG 180 GSNNIHDQDP LVKWLLEEED DLPAIGIIEE PWLDFIVEND VDKFNGIPST MSWDIGTTDW 240 LLDYQDFGVG DSTLLDDASM VDSSSGSNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	4e-82	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG047450.3