PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG054330.3
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 162aa    MW: 18493 Da    PI: 10.3691
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG054330.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY194.26e-60213724170
             YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsened.eevprvppv 115
                       vsvPs+s++++vtvrCGhCtsllsvnl+   q  ++++h         +e+ k ++ +++ n+  + ++s+++  +++s+++d e++ +    
  TRIDC5AG054330.3   2 VSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSPPVQDH--------SQENFKAHNISFRGNYPDYGTSSKYRMPMMFSTKSDqEHMLH---- 82 
                       9*************************************9........7899999**********9999998888777766655055554.... PP

             YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       +rPPekrqrvPsaynrfikeei+rik++nPdishreafs+aaknWahfP+ihfgl
  TRIDC5AG054330.3  83 MRPPEKRQRVPSAYNRFIKEEIRRIKTNNPDISHREAFSTAAKNWAHFPNIHFGL 137
                       8****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
RVSVPSNSML NIVTVRCGHC TSLLSVNLRG LIQSPPVQDH SQENFKAHNI SFRGNYPDYG  60
TSSKYRMPMM FSTKSDQEHM LHMRPPEKRQ RVPSAYNRFI KEEIRRIKTN NPDISHREAF  120
STAAKNWAHF PNIHFGLGSN ESSKKLDEAI AAPIPQKVQG LY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.14e-54YABBY family protein