PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG054330.6
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 185aa    MW: 20996 Da    PI: 9.9217
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG054330.6genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY203.96.3e-631416013170
             YABBY  13 vqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsene 105
                       +   fC   +avsvPs+s++++vtvrCGhCtsllsvnl+   q  ++++h         +e+ k ++ +++ n+  + ++s+++  +++s+++
  TRIDC5AG054330.6  14 MFLPFCLSCFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSPPVQDH--------SQENFKAHNISFRGNYPDYGTSSKYRMPMMFSTKS 98 
                       5567*********************************************9........7899999**********999999888877776665 PP

             YABBY 106 d.eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       d e++ +    +rPPekrqrvPsaynrfikeei+rik++nPdishreafs+aaknWahfP+ihfgl
  TRIDC5AG054330.6  99 DqEHMLH----MRPPEKRQRVPSAYNRFIKEEIRRIKTNNPDISHREAFSTAAKNWAHFPNIHFGL 160
                       5055554....8****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
VNSSTERAGH FVLMFLPFCL SCFAVSVPSN SMLNIVTVRC GHCTSLLSVN LRGLIQSPPV  60
QDHSQENFKA HNISFRGNYP DYGTSSKYRM PMMFSTKSDQ EHMLHMRPPE KRQRVPSAYN  120
RFIKEEIRRI KTNNPDISHR EAFSTAAKNW AHFPNIHFGL GSNESSKKLD EAIAAPIPQK  180
VQGLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.14e-56YABBY family protein