PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG054530.6
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YA
Protein Properties Length: 254aa    MW: 27617.1 Da    PI: 9.6283
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG054530.6genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.57.2e-3190146158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       d+p+YVNaKQy++Il+RR +Rak+e+e++l  k+rkpylheSRh+hA+rR+Rg+gGrF
  TRIDC5AG054530.6  90 DAPIYVNAKQYEGILRRRRARAKVERENQL-VKGRKPYLHESRHRHAMRRARGTGGRF 146
                       68****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
SNHILISYTV ALGNLESGGN KGEKPMEHSA TIALQSPLPE YNSRFEFGPG PSMMSSGYPS  60
AEQCYGLLTT YAMKSTPGGR LLLPLNATAD APIYVNAKQY EGILRRRRAR AKVERENQLV  120
KGRKPYLHES RHRHAMRRAR GTGGRFLNTK KEGNGKDAGG GGKRAECAPP TRFATSPSSV  180
IPSNPHSRSS ISSLSGSEVS SMYDHDDVDH YNSIEHLRTP FFTPLPIIMD GEHGASAPFK  240
WATAADGCCE LLKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131140RHRHAMRRAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.31e-23NF-YA family protein