PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG055120.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 142aa MW: 15028.3 Da PI: 8.0841

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG055120.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.2	5.5e-13	12	36	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV TRIDC5AG055120.6 12 CGGCRTLLMYTRNADTVRCSCCSTV 36 ***********************99 PP
2	zf-LSD1	45.4	1.4e-14	50	73	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg Crt+L+YP GApsV+Ca+Cd TRIDC5AG055120.6 50 CGRCRTTLMYPHGAPSVKCAICDY 73 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence
QIAAVEMAQL ICGGCRTLLM YTRNADTVRC SCCSTVNLVR PVNNIAHVNC GRCRTTLMYP 60 HGAPSVKCAI CDYITNITNT GINTMSPAPC PRPTSNESAY NASSASVPTP QPQNVTVVVE 120 NPMTVDEKGK LVSNVVVGIT PG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-32	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG055120.6